Alternatives and similar repositories for Optimus:

Users that are interested in Optimus are comparing it to the libraries listed below

• msdk / msdk
  MSDK source code repository
  ☆39Updated 2 years ago
• RogerGinBer / RHermes
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆25Updated 2 weeks ago
• ZhuMSLab / DecoMetDIA
  ☆11Updated 2 years ago
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆24Updated 4 months ago
• computational-metabolomics / msPurity
  R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
  ☆15Updated 10 months ago
• eMetaboHUB / MS-CleanR
  ☆25Updated last year
• HUPO-PSI / mzIdentML
  Repository for mzIdentML and the corresponding examples
  ☆24Updated 9 months ago
• WMBEdmands / compMS2Miner
  metabolite identification R-package for metabolomic high-resolution LC-MS datasets.
  ☆14Updated 7 years ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆47Updated last week
• biosustain / pyOpenMS_UmetaFlow
  Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)
  ☆18Updated 4 months ago
• gggraca / MetaboAnnotatoR
  Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets
  ☆12Updated 3 years ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆21Updated this week
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆40Updated 9 months ago
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆52Updated 3 years ago
• HuanLab / ISFrag
  A bioinformatic tool facilitating automated in-source fragmentation identification
  ☆10Updated 2 years ago
• compomics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 3 years ago
• Roestlab / DIAlignR
  This is a R package for alignment of DIA mass-spec data
  ☆12Updated 4 years ago
• ipb-halle / MetFragRelaunched
  Relaunch of the initial MetFrag project.
  ☆18Updated last week
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆20Updated 4 months ago
• MRMkit / MRMkit
  ☆8Updated 6 months ago
• rpeckner-broad / Specter
  Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics
  ☆18Updated 6 years ago
• fickludd / dinosaur
  Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.
  ☆43Updated 2 years ago
• computational-metabolomics / dimspy
  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
  ☆19Updated last year
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆19Updated 9 months ago
• alexandrovteam / curatr
  ☆14Updated 2 years ago
• ccdmb / BioDendro
  A package to cluster and visualise MS/MS spectral data
  ☆11Updated 4 years ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• MetaSys-LISBP / IsoCor
  IsoCor: Isotope Correction for mass spectrometry labeling experiments
  ☆24Updated 3 weeks ago
• zhengfj1994 / MetEx
  MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.
  ☆16Updated last year