SEAStAR is a package of tools supporting the construction of complete analysis pipelines for next-generation (Illumina®, SOLiD™) sequencing data generated from environmental samples.
☆13Feb 27, 2019Updated 7 years ago
Alternatives and similar repositories for SEAStAR
Users that are interested in SEAStAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- shotgun pipeline☆12Apr 3, 2019Updated 7 years ago
- The Nifty GNU Sequence Library☆11May 28, 2013Updated 13 years ago
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆21Feb 22, 2018Updated 8 years ago
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- AXIOME - Automation, Extension, and Integration Of Microbial Ecology: Helper tools to make managing numerical ecology pipelines easier☆13Jun 20, 2014Updated 12 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics☆26Mar 21, 2013Updated 13 years ago
- Processing support for Greengenes2☆15Jul 31, 2023Updated 3 years ago
- SEquence ALignment evaluation suite☆10Sep 11, 2012Updated 14 years ago
- Data management utilities for curating, documenting, and publishing data.☆14Nov 4, 2026Updated last week
- Shiny app for retention time prediction☆11Dec 1, 2025Updated 11 months ago
- ☆16Feb 14, 2017Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Sep 30, 2025Updated last year
- Python package providing access, visualization, and analysis of ocean data sets stored at Simons CMAP database.☆11Sep 12, 2019Updated 7 years ago
- MIX: Combining multiple assemblies from NGS data☆13Apr 14, 2016Updated 10 years ago
- Web-based software for visualization of molecular maps in 2D and 3D☆28Jul 31, 2023Updated 3 years ago
- Ocean Health Index - R library of core functions☆20Aug 14, 2024Updated 2 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆21May 28, 2026Updated 5 months ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 10 months ago
- An extensible framework for genome assembly.☆12Nov 10, 2022Updated 4 years ago
- ☆44Apr 2, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ✅ PeopleBudget is an open-source tool for hosting participatory budgets elections at the local level.☆10Oct 4, 2022Updated 4 years ago
- Tour of the dynamics of change and motion using computational thinking with Python☆14Mar 19, 2026Updated 7 months ago
- R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities☆20Jul 14, 2020Updated 6 years ago
- ☆18Dec 5, 2017Updated 8 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- ☆26Oct 31, 2019Updated 7 years ago
- ingestr: An R package for reading environmental data from raw formats into dataframes.☆18Sep 23, 2020Updated 6 years ago
- GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes☆12Oct 17, 2026Updated 3 weeks ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a simple read-only sequence database, designed for short reads☆20Dec 19, 2016Updated 9 years ago
- selbal: selection of balances for microbial signatures☆33Feb 24, 2025Updated last year
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- proteaAudio is a free cross-platform 2D audio library for C++ and Lua. This repo contains enhancements for Linux.☆13May 27, 2012Updated 14 years ago
- An extension of Velvet assembler to de novo metagenome assembly from short sequence reads☆15May 29, 2012Updated 14 years ago
- Miscellaneous tools for reproducible research with R.☆23Jul 2, 2025Updated last year
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 10 years ago
Are these results useful?