Extract the PAE & pLDDT value of Alphafold2 from .pkl to .png, .csv & .pdb file.
☆22Jan 2, 2022Updated 4 years ago
Alternatives and similar repositories for plddt2csv
Users that are interested in plddt2csv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for macromolecular model-building☆18Apr 13, 2026Updated 2 weeks ago
- Dashboard for LLM Drug Discovery Challenge.☆14Sep 6, 2023Updated 2 years ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Sep 4, 2023Updated 2 years ago
- ☆11Mar 12, 2026Updated last month
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 4 years ago
- DeepDelta is a pairwise deep learning approach based on Chemprop that processes two molecules simultaneously and learns to predict proper…☆50Mar 11, 2024Updated 2 years ago
- Deep Binding Structure RMSD Prediction☆22Mar 19, 2021Updated 5 years ago
- Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.☆10Aug 27, 2024Updated last year
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Dec 14, 2023Updated 2 years ago
- Material to run the HADDOCK antibody-antigen modelling protocol☆23Apr 13, 2026Updated 2 weeks ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated 2 months ago
- ☆14Apr 16, 2024Updated 2 years ago
- ☆32Apr 9, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The Swiss Army knife for carbohydrate structure validation, refinement and analysis☆29Apr 23, 2026Updated last week
- Python code to automatically interact with PDBePISA web server☆10Jun 27, 2022Updated 3 years ago
- ☆19Nov 10, 2021Updated 4 years ago
- AlphaFold-initiated replica exchange protein docking☆91Jun 5, 2025Updated 10 months ago
- ☆12Jun 19, 2018Updated 7 years ago
- MPI and MPI - CUDA accelerated Huffman encoding☆10Jul 26, 2017Updated 8 years ago
- This script can clean up the disordered region in the AlphaFold DB structures to adapt it to the molecular docking, extract the sequence …☆15Apr 20, 2023Updated 3 years ago
- Dockerized Version of the DiffDock model from MIT☆13May 22, 2023Updated 2 years ago
- 3D-CNN based water position prediction method☆11Nov 20, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆17Sep 20, 2022Updated 3 years ago
- A domain parser for Alphafold models☆48Dec 12, 2023Updated 2 years ago
- ☆28Nov 17, 2025Updated 5 months ago
- Full-length protein structure determination from cryo-EM maps using deep learning☆15May 28, 2023Updated 2 years ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆16Mar 27, 2024Updated 2 years ago
- This repository provides an implementation of the DTi2Vec tool, to identify Drug-Target interaction using network embedding and ensemble …☆12Sep 28, 2021Updated 4 years ago
- Xtrapol8 is software for the structure determination of low-occupancy states in crystallography☆14Mar 6, 2026Updated last month
- Streamlit web application to deploy a machine learning binary classifier to predict the activity of antimicrobial peptides☆10Dec 13, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Supporting code for the paper «Leveraging molecular structure and bioactivity with chemical language models for drug design»☆12Feb 22, 2022Updated 4 years ago
- Drug discovery project by making use of the Tox-21 dataset.☆22Apr 27, 2023Updated 3 years ago
- gcn for prediction of protein interactions，图卷积用于蛋白质相互作用。☆24Nov 15, 2021Updated 4 years ago
- Tutorials on doing AMBER based Metadynamics and Gaussian Accelerated MD (GaMD)☆12Dec 1, 2025Updated 5 months ago
- A generative model for molecular generation via multi-step chemical reactions☆14Jul 24, 2024Updated last year
- Cryo-EM/ET image analysis☆14Mar 30, 2026Updated last month
- Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, …☆39Aug 3, 2021Updated 4 years ago