This is the repository for the Python based program for automated deep phenotype analysis of clinical information using large language models (LLMs) and Retrieval Augmented Generation (RAG)
☆33Sep 30, 2025Updated last year
Alternatives and similar repositories for RAG-HPO
Users that are interested in RAG-HPO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22May 19, 2025Updated last year
- A python library for calculating semantic similarity between patients in N3C☆14Oct 5, 2022Updated 4 years ago
- Documentation and tutorials worth sharing.☆10Dec 7, 2022Updated 3 years ago
- Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies.☆12Jun 2, 2022Updated 4 years ago
- PhenoTagger☆67Jan 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- AI-MARRVEL (AIM) is an AI system for rare genetic disorder diagnosis☆23May 12, 2026Updated 5 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆17Jun 14, 2023Updated 3 years ago
- Classifier of pathogenic non-coding variants in Mendelian diseases☆11Feb 6, 2020Updated 6 years ago
- Customizable translation of OBO graphs to dot for visualization using graphviz and other tools☆27Feb 21, 2025Updated last year
- ☆14Dec 13, 2023Updated 2 years ago
- phenol: Phenotype ontology library☆26Jun 30, 2026Updated 3 months ago
- ☆28Aug 25, 2025Updated last year
- Finding cryptic relationships to boost disease gene detection☆12May 31, 2023Updated 3 years ago
- ☆24Nov 30, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Sep 30, 2026Updated 2 weeks ago
- An automated workflow to create disease-specific Knowledge Graphs☆25Mar 24, 2026Updated 6 months ago
- loinc2hpo Annotation Data☆26Aug 4, 2022Updated 4 years ago
- ☆15Nov 22, 2022Updated 3 years ago
- Geneyx Analysis API☆11Oct 7, 2026Updated last week
- ☆13Aug 6, 2019Updated 7 years ago
- BD2K Module 14☆25Jun 11, 2021Updated 5 years ago
- ☆35Jan 11, 2025Updated last year
- R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.☆18Oct 1, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A software toolkit for the interconversion of standard data models for phenotypic data☆18Updated this week
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆31May 28, 2021Updated 5 years ago
- Wrapper for multiple AI coders (goose, claude code, codex)☆22Dec 15, 2025Updated 9 months ago
- ☆17May 14, 2023Updated 3 years ago
- A Comprehensive Rare Disease Diagnostic Dataset with nearly 50,000 patients covering more than 4000 diseases☆53Mar 13, 2026Updated 7 months ago
- ☆11Oct 21, 2016Updated 9 years ago
- LLM-based gene function enrichment tool☆18Feb 19, 2025Updated last year
- ☆22Aug 10, 2026Updated 2 months ago
- Repository for the family history/pedigree project☆13Aug 26, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Summary Dashboard for Open Biological and Biomedical Ontologies☆24Jun 8, 2026Updated 4 months ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆29Aug 7, 2026Updated 2 months ago
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆60Apr 9, 2026Updated 6 months ago
- An NLP pipeline for COVID-19 surveillance used in the Department of Veterans Affairs Biosurveillance.☆15Oct 20, 2022Updated 3 years ago
- Ontoclick - A web browser extension to turn highlighted text into a proper Ontology term.☆13Jun 2, 2023Updated 3 years ago
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆35Jan 16, 2024Updated 2 years ago
- Language model for cancer domain☆14Apr 7, 2022Updated 4 years ago