☆22Aug 6, 2026Updated this week
Alternatives and similar repositories for Mira-nf
Users that are interested in Mira-nf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.☆28Jul 6, 2026Updated last month
- Viral (meta)-genome assembly pipeline.☆23Jul 22, 2026Updated 2 weeks ago
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- ☆10Apr 16, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Updated this week
- Extract subsets of ONT (Nanopore) reads based on time☆25Sep 12, 2024Updated last year
- ☆29May 22, 2025Updated last year
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆16Feb 19, 2026Updated 5 months ago
- ☆24Feb 2, 2026Updated 6 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 2 months ago
- Genome browser 🧬👀🚀☆34Jun 14, 2026Updated last month
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Reference-based consensus creation☆61Updated this week
- Surveillance of pathogens using population genomics and sequencing☆62Jul 27, 2026Updated last week
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆20Updated this week
- Python bindings to spoa☆22Dec 3, 2025Updated 8 months ago
- Scripts and reference files to type Group A Streptococcus☆11Apr 1, 2026Updated 4 months ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Sketch-based surveillance platform☆14Updated this week
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆40Feb 20, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated 10 months ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 8 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Genome size estimation from long read overlaps☆92Updated this week
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Jun 14, 2022Updated 4 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-read…☆80Updated this week
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 3 weeks ago
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated 3 months ago
- Repo for PrimerSchemes☆19Jul 6, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 7 months ago
- Pan-Genome Analysis Pipeline☆35Updated this week
- Influenza data pipeline to automate genotyping assignment☆44Mar 19, 2026Updated 4 months ago
- Datasets for https://github.com/nextstrain/nextclade☆47Updated this week
- ☆23Apr 2, 2026Updated 4 months ago
- emm Automatic Isolate Labeller☆15Mar 25, 2025Updated last year
- Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionfor…☆27Jan 7, 2025Updated last year