Framework for Creating Pipeline Software
☆22Nov 15, 2023Updated 2 years ago
Alternatives and similar repositories for LabPype
Users that are interested in LabPype are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for detecting genomic island insertions in clades of microbes.☆19Sep 14, 2023Updated 2 years ago
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 4 years ago
- Order and orientation of complete bacterial genomes☆29Jul 11, 2025Updated 8 months ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆20May 3, 2019Updated 6 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- Notes for a workshop on using git and github☆11Dec 13, 2019Updated 6 years ago
- ☆13Nov 1, 2022Updated 3 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jan 26, 2025Updated last year
- ☆10Feb 28, 2018Updated 8 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.☆11Apr 15, 2022Updated 3 years ago
- My personal website.☆12Feb 24, 2023Updated 3 years ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- Short course describing the considerations for a successful RNA-seq experiment☆19Updated this week
- ☆10Jun 21, 2015Updated 10 years ago
- A toolbox for rendering risk literacy more transparent☆19Jan 8, 2026Updated 2 months ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Feb 11, 2026Updated last month
- ☆13Sep 20, 2024Updated last year
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- Advanced Linux commands, regular expressions, shell scripting, and their integration into SLURM scripts.☆16Jul 23, 2020Updated 5 years ago
- Long read metagenomics practical at EBAME18☆18Oct 3, 2018Updated 7 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆43Jul 23, 2021Updated 4 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes