Framework for Creating Pipeline Software
☆22Nov 15, 2023Updated 2 years ago
Alternatives and similar repositories for LabPype
Users that are interested in LabPype are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for detecting genomic island insertions in clades of microbes.☆19Sep 14, 2023Updated 3 years ago
- This is an early version of POREquality, an R Markdown document designed to be ran as part of a Nanopore local basecalling pipeline.☆10Aug 5, 2019Updated 7 years ago
- scripts to automate illumina secondary analysis pipeline☆10Nov 2, 2019Updated 6 years ago
- Order and orientation of complete bacterial genomes☆29Jun 30, 2026Updated 4 months ago
- ☆21Mar 20, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A taxonomic classifier of plasmids☆32Jul 7, 2021Updated 5 years ago
- Notes for a workshop on using git and github☆10Dec 13, 2019Updated 6 years ago
- Phage Annotation Workshop 2021☆14Dec 6, 2021Updated 4 years ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆21May 3, 2019Updated 7 years ago
- ☆24Nov 9, 2017Updated 8 years ago
- Scripts and utilities for automatic processing & management of Illumina NGS sequencing data within the Bioinformatics Core Facility at th…☆10Aug 20, 2026Updated 2 months ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Nov 30, 2015Updated 10 years ago
- Getting started in R with a little help from your friends.☆16Jan 14, 2018Updated 8 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆13Sep 19, 2017Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆13Nov 1, 2022Updated 3 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jul 6, 2026Updated 3 months ago
- Short course describing the considerations for a successful RNA-seq experiment☆19Mar 20, 2026Updated 7 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- ☆10Feb 28, 2018Updated 8 years ago
- A toolbox for rendering risk literacy more transparent☆19Updated this week
- ☆10Jun 21, 2015Updated 11 years ago
- Design capture probes☆10Apr 28, 2025Updated last year
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.☆11Apr 15, 2022Updated 4 years ago
- Advanced Linux commands, regular expressions, shell scripting, and their integration into SLURM scripts.☆16Jul 23, 2020Updated 6 years ago
- Long read metagenomics practical at EBAME18☆17Oct 3, 2018Updated 8 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆11Mar 10, 2026Updated 7 months ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 8 months ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Oct 5, 2026Updated 3 weeks ago
- Quantum computing "Hello World", using a letter search with Grover's algorithm and Qiskit.☆15Jan 28, 2023Updated 3 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆10Dec 21, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A genome alignment and visualization system☆10Apr 30, 2024Updated 2 years ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 6 years ago
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Jun 4, 2026Updated 4 months ago
- IS mapping software☆59Dec 3, 2021Updated 4 years ago