Framework for Creating Pipeline Software
☆22Nov 15, 2023Updated 2 years ago
Alternatives and similar repositories for LabPype
Users that are interested in LabPype are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for detecting genomic island insertions in clades of microbes.☆19Sep 14, 2023Updated 2 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Order and orientation of complete bacterial genomes☆29Jul 11, 2025Updated 9 months ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆20May 3, 2019Updated 6 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Nov 1, 2022Updated 3 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jan 26, 2025Updated last year
- ☆10Feb 28, 2018Updated 8 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.☆11Apr 15, 2022Updated 3 years ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- Short course describing the considerations for a successful RNA-seq experiment☆19Mar 20, 2026Updated 3 weeks ago
- ☆10Jun 21, 2015Updated 10 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A toolbox for rendering risk literacy more transparent☆19Jan 8, 2026Updated 3 months ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Mar 19, 2026Updated 3 weeks ago
- ☆13Sep 20, 2024Updated last year
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- Advanced Linux commands, regular expressions, shell scripting, and their integration into SLURM scripts.☆16Jul 23, 2020Updated 5 years ago
- Long read metagenomics practical at EBAME18☆18Oct 3, 2018Updated 7 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆43Jul 23, 2021Updated 4 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- IS mapping software☆57Dec 3, 2021Updated 4 years ago
- ☆10Jun 9, 2025Updated 10 months ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 5 years ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆46Apr 24, 2024Updated last year
- Variant call verification☆16May 12, 2025Updated 11 months ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 2 months ago
- ☆14Apr 2, 2026Updated last week
- ☆15May 1, 2025Updated 11 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 2 months ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 3 years ago
- Command line tool for Wave containers provisioning service☆19Updated this week
- Desktop tool for microbial genome annotation and gene detection☆13Jun 22, 2021Updated 4 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- whole genome MLST analysis☆51Mar 27, 2026Updated 2 weeks ago
- Learning resources originally for a class held December 2020 "Dry bench skills for Researchers". Expanding based upon mini-courses.☆11Jan 27, 2022Updated 4 years ago