Framework for Creating Pipeline Software
☆22Nov 15, 2023Updated 2 years ago
Alternatives and similar repositories for LabPype
Users that are interested in LabPype are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for detecting genomic island insertions in clades of microbes.☆19Sep 14, 2023Updated 2 years ago
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- Order and orientation of complete bacterial genomes☆29Jun 30, 2026Updated last month
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆21May 3, 2019Updated 7 years ago
- Notes for a workshop on using git and github☆10Dec 13, 2019Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Getting started in R with a little help from your friends.☆16Jan 14, 2018Updated 8 years ago
- ☆13Nov 1, 2022Updated 3 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jul 6, 2026Updated last month
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 5 months ago
- ☆10Feb 28, 2018Updated 8 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.☆11Apr 15, 2022Updated 4 years ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- My personal website.☆12Feb 24, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆44Dec 11, 2020Updated 5 years ago
- ☆10Jun 21, 2015Updated 11 years ago
- Short course describing the considerations for a successful RNA-seq experiment☆19Mar 20, 2026Updated 4 months ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Mar 19, 2026Updated 4 months ago
- A toolbox for rendering risk literacy more transparent☆19Jan 8, 2026Updated 7 months ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 4 years ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆13Sep 20, 2024Updated last year
- Advanced Linux commands, regular expressions, shell scripting, and their integration into SLURM scripts.☆16Jul 23, 2020Updated 6 years ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Apr 27, 2026Updated 3 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆44Jul 23, 2021Updated 5 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Jun 4, 2026Updated 2 months ago
- Long read metagenomics practical at EBAME18☆18Oct 3, 2018Updated 7 years ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆49Apr 24, 2024Updated 2 years ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- ☆10Jun 9, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- IS mapping software☆59Dec 3, 2021Updated 4 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 6 years ago
- Variant call verification☆19May 12, 2025Updated last year
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 8 months ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 5 months ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago