Alternatives and similar repositories for COVIDNPIs

Users that are interested in COVIDNPIs are comparing it to the libraries listed below

• gabriuma / basis_functions_approach_to_GP
  ☆56Updated 3 years ago
• adamhaber / pybrms
  Pythonic interface to R's brms
  ☆45Updated 3 years ago
• jtimonen / odemodeling
  R-package for building and fitting Bayesian ODE models in Stan
  ☆29Updated last year
• cmmid / covid-age
  Analysis code and data for COVID-19 age-specific clinical fraction
  ☆23Updated 5 years ago
• seantalts / simulation-based-calibration
  Repo for code from the SBC paper
  ☆24Updated 6 years ago
• omaclaren / open-learning-material
  Some teaching material and other educational resources
  ☆41Updated last month
• pyro-ppl / brmp
  Bayesian Regression Models in Pyro
  ☆72Updated last year
• dsheldon / covid
  Bayesian modeling of COVID-19
  ☆31Updated 2 years ago
• elizavetasemenova / prob-epi
  Course materials of "Bayesian Modelling and Probabilistic Programming with Numpyro, and Deep Generative Surrogates for Epidemiology"
  ☆70Updated 7 months ago
• JohnGoertz / Gumbi
  Gaussian Process Model Building Interface
  ☆51Updated 6 months ago
• arviz-devs / EABM
  Source repository for the online book Exploratory Analysis of Bayesian Models.
  ☆24Updated last month
• lee-group-cmu / RFCDE
  Random Forests for Conditional Density Estimation
  ☆42Updated 4 years ago
• bambinos / kulprit
  Kullback-Leibler projections for Bayesian model selection in Python
  ☆40Updated last month
• betanalpha / mcmc_diagnostics
  Markov chain Monte Carlo general, and Hamiltonian Monte Carlo specific, diagnostics for Stan
  ☆88Updated 2 months ago
• adamhaber / stan2tfp
  stan2tfp is a lightweight interface to the TensorFlow Probability backend of the Stan compiler. It provides the necessary objects and fun…
  ☆25Updated 3 years ago
• stan-dev / posteriordb
  Database with posteriors of interest for Bayesian inference
  ☆209Updated last month
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆18Updated 4 years ago
• flatironinstitute / mcmc-monitor
  Monitor MCMC runs in the browser
  ☆37Updated last year
• evdoxiataka / ipme
  An interactive visualization tool that transforms probabilistic programming models into an "Interactive Probabilistic Models Explorer".
  ☆24Updated last year
• LedgerInvesting / bayesblend
  Easily combine predictions from multiple Bayesian models using techniques including (pseudo) Bayesian model averaging, hierarchical stack…
  ☆36Updated 10 months ago
• MrinankSharma / COVID19NPISecondWave
  ☆15Updated 4 years ago
• CDCgov / PyRenew
  Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.
  ☆21Updated this week
• aakhmetz / COVID19IncubationPeriod
  Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)
  ☆14Updated 5 years ago
• betanalpha / jupyter_case_studies
  Inference case studies in jupyter
  ☆93Updated 6 years ago
• bambinos / educational-resources
  Educational resources
  ☆104Updated 3 years ago
• jgabry / bayes-vis-paper
  'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)
  ☆66Updated 4 years ago
• alan-turing-institute / jbc-turing-rss-nowcasting
  A Bayesian model for time-series count data with weekend effects and a lagged reporting process
  ☆10Updated 3 years ago
• stablemarkets / intro_bayesian_causal
  Repository for Introduction to Bayesian Estimation of Causal Effects
  ☆67Updated 4 years ago
• kieshaprem / synthetic-contact-matrices
  Updates to the synthetic contact matrices
  ☆37Updated 2 years ago
• ryantibs / quantgen
  Tools for generalized quantile modeling
  ☆15Updated 3 years ago