quqixun / BrainPrep
Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
☆202Updated 6 years ago
Alternatives and similar repositories for BrainPrep:
Users that are interested in BrainPrep are comparing it to the libraries listed below
- Deep Learning tools for brain medical images☆137Updated 7 months ago
- Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net☆132Updated 5 years ago
- normalize the intensities of various MR image modalities☆322Updated 2 months ago
- Framework for the reproducible processing of neuroimaging data with deep learning methods☆167Updated this week
- MRI brain extraction tool☆323Updated 3 months ago
- Pre-trained models and utilities for deep learning on medical images in Python☆211Updated last week
- A framework for joint super-resolution and image synthesis, without requiring real training data☆157Updated 11 months ago
- Pytorch pipeline for 3D image domain translation using Cycle-Generative-Adversarial-networks, without paired examples.☆153Updated 3 years ago
- Example download scripts for the OASIS3 project☆144Updated 2 months ago
- Robust Brain Extraction Tool for CT Head Images☆45Updated 4 years ago
- Automatic White Matter Bundle Segmentation☆233Updated last year
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆70Updated 8 months ago
- Resurces for MRI images processing and deep learning in 3D☆135Updated 2 years ago
- An AI-powered open-source medical image analysis toolbox☆63Updated 7 months ago
- We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D U…☆110Updated 4 years ago
- Code examples of the free course in Youtube of brain MRI preprocessing techniques in python☆64Updated 2 months ago
- Official Pytorch Implementation of "Generation of 3D Brain MRI Using Auto-Encoding Generative Adversarial Network" (accepted by MICCAI 20…☆128Updated 3 years ago
- It describes MRI to CT conversion, 3T to 7T conversion using Generative Adversarial Network (GAN).☆57Updated 3 years ago
- Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …☆34Updated 3 years ago
- Segment Source Distribution☆72Updated 2 years ago
- Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)☆64Updated 5 years ago
- 3D-Unet: patched based Pytorch implementation for medical images segmentation☆63Updated 3 years ago
- ☆356Updated 3 months ago
- Implementation of the DeepVesselNet deep learning network☆144Updated last year
- Deep Whole Brain Segmentation Using SLANT Method☆117Updated last year
- Easy multiple sclerosis white matter lesion segmentation using convolutional deep neural networks.☆47Updated last year
- A space to log issues, updates, and software related to the ATLAS (Anatomical Tracings of Lesions After Stroke) database.☆82Updated 2 years ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆34Updated last year
- Pretrained neural networks for UK Biobank brain MRI images. SFCN, 3D-ResNet etc.☆149Updated 5 months ago
- DICOM RT-Struct to mask☆101Updated last year