quqixun / BrainPrepLinks
Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
☆207Updated 7 years ago
Alternatives and similar repositories for BrainPrep
Users that are interested in BrainPrep are comparing it to the libraries listed below
Sorting:
- Example download scripts for the OASIS3 project☆162Updated last week
- Deep Learning tools for brain medical images☆139Updated last year
- Normalize MR image intensities in Python☆335Updated 2 months ago
- Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net☆131Updated 5 years ago
- 3D-Unet: patched based Pytorch implementation for medical images segmentation☆63Updated 4 years ago
- Resurces for MRI images processing and deep learning in 3D☆142Updated 3 years ago
- Deep Whole Brain Segmentation Using SLANT Method☆124Updated last year
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆91Updated last week
- Framework for the reproducible processing of neuroimaging data with deep learning methods☆174Updated this week
- Pre-trained models and utilities for deep learning on medical images in Python☆231Updated 2 months ago
- A space to log issues, updates, and software related to the ATLAS (Anatomical Tracings of Lesions After Stroke) database.☆83Updated 2 years ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆78Updated last year
- Implementation of the DeepVesselNet deep learning network☆152Updated 2 years ago
- Official Pytorch Implementation of "Generation of 3D Brain MRI Using Auto-Encoding Generative Adversarial Network" (accepted by MICCAI 20…☆130Updated 3 years ago
- MRI brain extraction tool☆361Updated 9 months ago
- Automatic Segmentation of Vestibular Schwannoma with MONAI (PyTorch)☆50Updated last year
- Robust Brain Extraction Tool for CT Head Images☆48Updated 4 years ago
- Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)☆65Updated 6 years ago
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.☆152Updated 3 years ago
- PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using…☆105Updated 4 years ago
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆87Updated 3 years ago
- Computes vesselness scores for 3-dimensional images.☆71Updated 8 years ago
- The project is used to do preprocessing on brain MR images by using Nipype.☆39Updated last year
- Code and models for the paper ISLES Challenge: U-shaped Convolution Neural Network with Dilated Convolution for 3D Stroke Lesion Segment…☆35Updated 6 years ago
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆106Updated last month
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆36Updated 6 months ago
- ☆374Updated 3 months ago
- Automatic 3D whole breast segmentation in breast MRI☆11Updated 5 years ago
- Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.☆28Updated last month
- A framework for joint super-resolution and image synthesis, without requiring real training data☆172Updated last year