quqixun / BrainPrepLinks
Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
☆208Updated 7 years ago
Alternatives and similar repositories for BrainPrep
Users that are interested in BrainPrep are comparing it to the libraries listed below
Sorting:
- Normalize MR image intensities in Python☆337Updated 3 months ago
- Deep Learning tools for brain medical images☆139Updated last year
- Example download scripts for the OASIS3 project☆164Updated last month
- Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net☆131Updated 5 years ago
- 3D-Unet: patched based Pytorch implementation for medical images segmentation☆63Updated 4 years ago
- MRI brain extraction tool☆367Updated 10 months ago
- Deep Whole Brain Segmentation Using SLANT Method☆125Updated last year
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆78Updated last year
- A space to log issues, updates, and software related to the ATLAS (Anatomical Tracings of Lesions After Stroke) database.☆83Updated 2 years ago
- Resurces for MRI images processing and deep learning in 3D☆142Updated 3 years ago
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆234Updated 3 weeks ago
- Framework for the reproducible processing of neuroimaging data with deep learning methods☆174Updated 3 weeks ago
- The project is used to do preprocessing on brain MR images by using Nipype.☆39Updated last year
- Automatic 3D whole breast segmentation in breast MRI☆11Updated 5 years ago
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆93Updated last month
- Robust Brain Extraction Tool for CT Head Images☆49Updated 5 years ago
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆87Updated 3 years ago
- Implementation of the DeepVesselNet deep learning network☆153Updated 2 years ago
- This Repo Will contain the Preprocessing Code for 3D Medical Imaging☆212Updated 5 years ago
- winning method for WMH segmentation challenge in MICCAI 2017☆48Updated 5 years ago
- This is N4 bias field correction for MRI☆25Updated 7 years ago
- PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using…☆105Updated 4 years ago
- Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)☆66Updated 6 years ago
- ☆81Updated 2 years ago
- Deep Learning Registration of the Prostate☆56Updated last year
- Workflow for Optimal Radiomics Classification☆79Updated 2 months ago
- Code and models for the paper ISLES Challenge: U-shaped Convolution Neural Network with Dilated Convolution for 3D Stroke Lesion Segment…☆35Updated 6 years ago
- Segment Source Distribution☆75Updated 3 years ago
- Automatic Segmentation of Vestibular Schwannoma with MONAI (PyTorch)☆50Updated last year
- A framework for joint super-resolution and image synthesis, without requiring real training data☆172Updated last year