vanandrew/brainextractor external links

---

GitHub - View repository

GitHub.dev - Open in online code editor

Star history - Growth chart over time

deps.dev - Dependencies and security vulnerabilities

Gitingest - Export source code for LLM usage

Repomix - Export source code for LLM usage

uithub - Export source code for LLM usage

Close

vanandrew/brainextractor

Readme badge preview -

If you own this repo, copy the snippet below and add it to your README.md

---

Copy

[![RelatedRepos](https://img.shields.io/badge/related-repos-yellow)](https://relatedrepos.com/gh/vanandrew/brainextractor)

Close

vanandrew / brainextractorView on GitHubMore

• External links
• Readme badge

Brain Extraction Tool in Python

☆45May 13, 2026Updated 4 months ago

Alternatives and similar repositories for brainextractor

Users that are interested in brainextractor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.

• DBC-Lab / Atlases-empowered_Lifespan_Skull_Stripping

  View on GitHub
  ☆13May 21, 2025Updated last year
• ZZgroupSJTU / RFpulsesEducation

  View on GitHub
  This is a demo code for RF pulses in 2022 ISMRM
  ☆10May 6, 2022Updated 4 years ago
• WCHN / CTseg

  View on GitHub
  CTseg: A Tool for Brain CT Segmentation, Spatial Normalisation, and Volumetrics
  ☆92May 27, 2026Updated 3 months ago
• eddysolo / demo_dce_recon

  View on GitHub
  Demonstration of DCE MRI reconstruction
  ☆16Mar 5, 2025Updated last year
• soumickmj / StRegA

  View on GitHub
  ☆14Nov 28, 2025Updated 9 months ago
• AI Agents on DigitalOcean Gradient AI Platform • Ad
  Build production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
• mckib2 / rawdatarinator

  View on GitHub
  Read Siemens raw data
  ☆14Sep 3, 2024Updated 2 years ago
• fithisux / FSL

  View on GitHub
  Source code for FSL: http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/
  ☆28Jan 29, 2016Updated 10 years ago
• MIC-DKFZ / HD-BET

  View on GitHub
  MRI brain extraction tool
  ☆432Dec 18, 2024Updated last year
• WuChanada / StripSkullCT

  View on GitHub
  Extract brain and remove skulls from brain CT and CTA images
  ☆35Jul 3, 2023Updated 3 years ago
• korbinian90 / ASPIRE

  View on GitHub
  MRI phase combination algorithms for array-coils
  ☆20Aug 22, 2026Updated 3 weeks ago
• aqqush / CT_BET

  View on GitHub
  Robust Brain Extraction Tool for CT Head Images
  ☆51Oct 7, 2020Updated 5 years ago
• spm / spm-docker

  View on GitHub
  SPM Containers (Docker & Singularity)
  ☆27Aug 5, 2026Updated last month
• wtclarke / pymapvbvd

  View on GitHub
  Python port of mapVBVD
  ☆55Oct 31, 2024Updated last year
• biomedia-mira / drop2

  View on GitHub
  drop2 - intensity-based image registration
  ☆38Aug 28, 2020Updated 6 years ago
• Managed Database hosting by DigitalOcean • Ad
  PostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
• JulianKlug / PerfusionCT-Net

  View on GitHub
  A UNet for the analysis of perfusion CT imaging in the setting of acute ischemic stroke.
  ☆17May 8, 2025Updated last year
• jarodroland / ConvOuch

  View on GitHub
  ☆14Aug 10, 2018Updated 8 years ago
• yuta-hi / keras_bayesian_unet

  View on GitHub
  Bayesian U-Net for Keras
  ☆11Dec 28, 2019Updated 6 years ago
• Wangyulin-user / TUMSyn

  View on GitHub
  Official code of "Towards General Text-guided Universal Image Synthesis Framework for Customized Multimodal Brain MRI"
  ☆46Nov 1, 2025Updated 10 months ago
• pramod-zillella / Pipelined-Tumor-Segmentation

  View on GitHub
  A complete pipelined automatic process for skull stripping and tumor segmentation from Brain MRI using Thresholding.
  ☆14Jun 1, 2021Updated 5 years ago
• JanaLipkova / s3

  View on GitHub
  Skull stripping and brain tissue segmentation
  ☆121Apr 17, 2019Updated 7 years ago
• ouyangjiahong / longitudinal-neighbourhood-embedding

  View on GitHub
  Self-supervised Longitudinal Neighbourhood Embedding (LNE), MICCAI2021 & Speicial Issue on Medical Image Analysis
  ☆34Mar 2, 2023Updated 3 years ago
• prediction2020 / 3DGAN_synthesis_of_3D_TOF_MRA_with_segmentation_labels

  View on GitHub
  ☆12Nov 23, 2021Updated 4 years ago
• SimpleITK / SimpleITK-Notebooks

  View on GitHub
  ipython notebooks for learning how to use SimpleITK
  ☆14Apr 14, 2017Updated 9 years ago
• Simple, predictable pricing with DigitalOcean hosting • Ad
  Always know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
• princetonvisualai / OverlookedFactors

  View on GitHub
  Overlooked Factors in Concept-based Explanations: Dataset Choice, Concept Learnability, and Human Capability (CVPR 2023)
  ☆10Mar 14, 2023Updated 3 years ago
• SNU-LIST / chi-separation

  View on GitHub
  Code for magnetic susceptibility source separation
  ☆34Jun 3, 2026Updated 3 months ago
• djdanks / DeSurv

  View on GitHub
  ☆10Feb 23, 2022Updated 4 years ago
• VelazcoJD / QtVTKTutorial

  View on GitHub
  Sample project for the Qt VTK CMake project tutorial.
  ☆11Mar 23, 2020Updated 6 years ago
• stanfordmlgroup / ed-monitor-data

  View on GitHub
  ☆13May 11, 2024Updated 2 years ago
• nighres / nighres

  View on GitHub
  Processing tools for high-resolution neuroimaging
  ☆73Dec 18, 2025Updated 9 months ago
• faildeny / FednnUNet

  View on GitHub
  Federated Learning framework extending the nnUNet
  ☆16Nov 6, 2025Updated 10 months ago
• wwu-mmll / deepbet

  View on GitHub
  Fast brain extraction using neural networks
  ☆53Jul 23, 2024Updated 2 years ago
• DL4mHealth / EF-Net

  View on GitHub
  [Sensors 2024] Mental State Recognition by Analyzing Multimodal EEG-fNIRS via CNN
  ☆30Jun 11, 2024Updated 2 years ago
• 1-Click AI Models by DigitalOcean Gradient • Ad
  Deploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
• kslav / cdr_mri

  View on GitHub
  This is the code corresponding to our publication introducing ConvDecoder with physics-based regularization (CD+r) for MRI
  ☆10Feb 6, 2026Updated 7 months ago
• codingfisch / brain-stl

  View on GitHub
  Turn your brain MRI into a printable 3D model in seconds 🧠➡️🖨️
  ☆16Apr 17, 2026Updated 5 months ago
• AIM-KannLab / BrainIAC

  View on GitHub
  ☆158Feb 5, 2026Updated 7 months ago
• MIC-DKFZ / Longitudinal4DMed

  View on GitHub
  ☆19Sep 2, 2026Updated 2 weeks ago
• CBICA / BrainMaGe

  View on GitHub
  Brain extraction in presence of abnormalities, using single and multiple MRI modalities
  ☆39Mar 21, 2025Updated last year
• lazatsoc / cbis_ddsm_dataloader

  View on GitHub
  ☆15Apr 7, 2024Updated 2 years ago
• pehses / mapVBVD

  View on GitHub
  Matlab/octave tool to read twix raw data from Siemens MRI scanners.
  ☆49Sep 4, 2026Updated 2 weeks ago