Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the presence of pathology or treatment-induced tissue alterations.
☆40Jul 14, 2021Updated 4 years ago
Alternatives and similar repositories for HD-BET
Users that are interested in HD-BET are comparing it to the libraries listed below
Sorting:
- Automated processing of MRI in neuro-oncology (combining HD-BET, image co-registration, and HD-GLIO in one container)☆33Jun 5, 2022Updated 3 years ago
- Automated deep-learning based brain tumor segmentation on MRI☆38Aug 24, 2022Updated 3 years ago
- Automated processing tool for MRI in neuro-oncology (brain tumor segmentation, volumetric tumor response assessment) provided as Containe…☆11Aug 8, 2022Updated 3 years ago
- MRI brain extraction tool☆398Dec 18, 2024Updated last year
- Scripts to work with the chaos challenge☆26Mar 4, 2019Updated 7 years ago
- Automated deep learning based segmentation of multiple sclerosis lesions on MRI☆14Sep 6, 2022Updated 3 years ago
- ICH Segmentation of CT scans☆27Nov 18, 2025Updated 3 months ago
- ☆32Aug 9, 2023Updated 2 years ago
- A platform for image algorithm validation in public challenges.☆16Jan 13, 2017Updated 9 years ago
- NeuroImaging Quality Control (niQC)☆13Mar 30, 2024Updated last year
- Tools for accessing open data sets published by the Allen Institute for Brain Sciences☆15Jun 29, 2021Updated 4 years ago
- A tool to do quick and dirty inspection of multichannel 3D data. I use it mainly to visualize batches for deep learning.☆54Feb 8, 2025Updated last year
- Reconstruction of preprocessed q-space images (dMRI)☆20Feb 19, 2026Updated 2 weeks ago
- sourcecode of multi-planar prostate segmentation (ISBI publication in 2018)☆17Oct 8, 2019Updated 6 years ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆38Mar 21, 2025Updated 11 months ago
- ☆21Nov 28, 2023Updated 2 years ago
- 3D Slicer extension for accessing HD-BET brain extraction tool for skull stripping in brain MRI images.☆26Jan 20, 2025Updated last year
- ☆17Feb 3, 2020Updated 6 years ago
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆47May 19, 2021Updated 4 years ago
- Automatic White Matter Bundle Segmentation☆254Feb 23, 2026Updated last week
- Normalize MR image intensities in Python☆338Jul 21, 2025Updated 7 months ago
- A PyTorch implementation of the Probabilistic U-Net, applied to probabilistic glioma growth☆43Jul 10, 2019Updated 6 years ago
- Predicting genetics and providing segmentation of glioma☆20Aug 13, 2024Updated last year
- Code for deep learning-based glioma/tumor growth models☆27Nov 30, 2021Updated 4 years ago
- OHIF DICOM Web viewer with server-side AI integration, supporting SAM2, nninteractive, medSAM2, SAM3, VoxTell, and MedGemma to enable adv…☆42Feb 20, 2026Updated 2 weeks ago
- Preprocessing of arterial spin labeling (ASL) data☆54Updated this week
- Cerebrovascular Image Analysis - (Matlab) Toolkit☆26Sep 18, 2022Updated 3 years ago
- ☆27Feb 19, 2026Updated 2 weeks ago
- DS6: Deformation-aware learning for small vesselsegmentation with small, imperfectly labeled dataset☆22Oct 6, 2024Updated last year
- ☆25Feb 13, 2025Updated last year
- This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MI…☆52Dec 8, 2022Updated 3 years ago
- A U-Net combined with a variational auto-encoder that is able to learn conditional distributions over semantic segmentations.☆23Dec 17, 2018Updated 7 years ago
- ☆43Jan 31, 2026Updated last month
- ☆31Dec 11, 2023Updated 2 years ago
- Preprocessing of diffusion MRI☆178Feb 19, 2026Updated 2 weeks ago
- X-Net: Brain Stroke Lesion Segmentation Based on Depthwise Seperable Convolution and Long Range Dependencies (MICCAI 2019)☆53Dec 24, 2020Updated 5 years ago
- Repository for the Medical Out-of-Distribution Analysis Challenge.☆64Jul 25, 2024Updated last year
- Assessing Reliability and Challenges of Uncertainty Estimations for Medical Image Segmentation☆56Oct 3, 2023Updated 2 years ago
- ☆26Oct 16, 2025Updated 4 months ago