Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the presence of pathology or treatment-induced tissue alterations.
☆40Jul 14, 2021Updated 5 years ago
Alternatives and similar repositories for HD-BET
Users that are interested in HD-BET are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated deep-learning based brain tumor segmentation on MRI☆41Aug 24, 2022Updated 3 years ago
- Automated processing of MRI in neuro-oncology (combining HD-BET, image co-registration, and HD-GLIO in one container)☆35Jun 5, 2022Updated 4 years ago
- Automated processing tool for MRI in neuro-oncology (brain tumor segmentation, volumetric tumor response assessment) provided as Containe…☆11Aug 8, 2022Updated 3 years ago
- MRI brain extraction tool☆431Dec 18, 2024Updated last year
- Scripts to work with the chaos challenge☆27Mar 4, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for accessing open data sets published by the Allen Institute for Brain Sciences☆15Jun 29, 2021Updated 5 years ago
- NeuroImaging Quality Control (niQC)☆14Mar 30, 2024Updated 2 years ago
- PyTorch implementation of FastSurferCNN☆621Updated this week
- Code for deep learning-based glioma/tumor growth models☆27Nov 30, 2021Updated 4 years ago
- 3D Slicer extension for accessing HD-BET brain extraction tool for skull stripping in brain MRI images.☆27Jan 20, 2025Updated last year
- RSANet: Recurrent Slice-wise Attention Network for Multiple Sclerosis Lesion Segmentation (MICCAI 2019)☆26Feb 4, 2020Updated 6 years ago
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆45Jul 13, 2026Updated last week
- This docker and singularity image bundles the tgv-qsm algorithm with bet2, dcm2niix and provides a complete QSM processing pipeline.☆10Mar 10, 2022Updated 4 years ago
- Predicting genetics and providing segmentation of glioma☆20Aug 13, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆38Mar 21, 2025Updated last year
- Automatic White Matter Bundle Segmentation☆264Feb 23, 2026Updated 4 months ago
- A tool to do quick and dirty inspection of multichannel 3D data. I use it mainly to visualize batches for deep learning.☆53Feb 8, 2025Updated last year
- the released codes for DiamondGAN - a scalable multiple-to-one domain translation approach in medical imaging☆12Jan 16, 2020Updated 6 years ago
- Read and write mha files using Python☆10Oct 14, 2013Updated 12 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- Reconstruction of preprocessed q-space images (dMRI)☆23Updated this week
- ICH Segmentation of CT scans☆27Nov 18, 2025Updated 8 months ago
- ☆34Dec 11, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆49May 19, 2021Updated 5 years ago
- ☆32Aug 9, 2023Updated 2 years ago
- ☆21Jun 28, 2026Updated 3 weeks ago
- AssemblyNet: 3D Whole Brain MRI segmentation pipeline☆74Jun 28, 2023Updated 3 years ago
- Normalize MR image intensities in Python☆340Jul 21, 2025Updated 11 months ago
- XNAT pipelines repository☆12Jul 6, 2022Updated 4 years ago
- ☆21Nov 28, 2023Updated 2 years ago
- PysynthMRI is a python open-source tool which provides a user-friendly interface to synthesize contrast weighted images.☆25Nov 10, 2025Updated 8 months ago
- Repository for the Medical Out-of-Distribution Analysis Challenge.☆65Jul 25, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Basic minc-tools from former minc repository☆34Jul 7, 2026Updated last week
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 10 months ago
- A freesurfer segmentation pipeline optimised for 7T datasets☆15Oct 20, 2016Updated 9 years ago
- Adversarially training Image and Spatial Transformer Networks to perform Domain Adapation☆13Oct 3, 2020Updated 5 years ago
- Hyppopy is a python toolbox for blackbox optimization. It's purpose is to offer a unified and easy to use interface to a collection of so…☆27Apr 26, 2022Updated 4 years ago
- mrTools - matlab based tools for fMRI☆21Apr 4, 2025Updated last year
- Automated deep learning based segmentation of multiple sclerosis lesions on MRI☆15Sep 6, 2022Updated 3 years ago