MIC-DKFZ / niicat
This is a tool to quickly preview nifti images on the terminal
☆59Updated last month
Alternatives and similar repositories for niicat:
Users that are interested in niicat are comparing it to the libraries listed below
- Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …☆34Updated 3 years ago
- Automated deep-learning based brain tumor segmentation on MRI☆28Updated 2 years ago
- A project to provide custom sorting and renaming of dicom files☆77Updated 8 months ago
- A single NIfTI image saved with all 48 spatial rotation permutations☆29Updated 3 years ago
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆65Updated this week
- An AI-powered open-source medical image analysis toolbox☆63Updated 7 months ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆70Updated 7 months ago
- Pre-trained models and utilities for deep learning on medical images in Python☆211Updated last week
- TF2.3 DCE-/DSC-MRI processing code, collected, tested and made available to all.☆36Updated 3 weeks ago
- ☆27Updated 3 years ago
- A space to log issues, updates, and software related to the ATLAS (Anatomical Tracings of Lesions After Stroke) database.☆81Updated 2 years ago
- Very fast greedy diffeomorphic registration code☆71Updated last month
- AssemblyNet: 3D Whole Brain MRI segmentation pipeline☆58Updated last year
- Library for generating images by sampling a GMM conditioned on label maps☆23Updated 11 months ago
- LST-AI - Deep Learning Ensemble for Accurate MS Lesion Segmentation☆29Updated 3 months ago
- Automated processing of MRI in neuro-oncology (combining HD-BET, image co-registration, and HD-GLIO in one container)☆27Updated 2 years ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆34Updated last year
- MALPEM whole-brain segmentation framework☆24Updated last year
- Brain Segmentation with MONAI and Dynamic Unet (nn-unet)☆17Updated last month
- Neuroimaging in PyTorch☆90Updated last week
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆105Updated 3 months ago
- This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.☆52Updated 2 months ago
- A framework for joint super-resolution and image synthesis, without requiring real training data☆157Updated 11 months ago
- MIRTK based SVR reconstruction☆50Updated 4 months ago
- Recipes for common medical image segmentation tasks using 3D Slicer☆54Updated 2 years ago
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆97Updated last week
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆45Updated 3 years ago
- Multi-site dMRI harmonization☆47Updated 2 months ago
- XNAT in Python☆72Updated last month
- dMRI based fiber tracking using parallel transport tractography☆25Updated 2 weeks ago