aspitaleri / gmxpbsaLinks
MM/PBSA binding free energy calculation
☆23Updated last year
Alternatives and similar repositories for gmxpbsa
Users that are interested in gmxpbsa are comparing it to the libraries listed below
Sorting:
- MD pharmacophores and virtual screening☆33Updated last year
- Molecular Dynamics for Experimentalists☆57Updated last week
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- Analysis of contacts in molecular dynamics trajectories☆42Updated 5 years ago
- ☆12Updated 4 years ago
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆69Updated 2 months ago
- PyDock Tutorial☆32Updated 6 years ago
- Fully automated high-throughput MD pipeline☆61Updated last week
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆34Updated last year
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆25Updated this week
- Input files for GROMACS tutorials written for the Journal of Physical Chemistry B☆20Updated 11 months ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆49Updated 5 months ago
- Utilities to assist with Amber Molecular Dynamics structure preparation and MMPBSA.py energy methods☆19Updated 5 years ago
- Ligand-Protein Interaction Mapping☆55Updated last month
- MM-PBSA method for GROMACS. For full description, please visit homepage:☆67Updated 3 weeks ago
- A Consensus Docking Plugin for PyMOL☆73Updated last year
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆59Updated last week
- Analysis of alphafold and colabfold results☆28Updated 3 weeks ago
- MDplot: Visualise Molecular Dynamics☆28Updated 3 years ago
- KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.☆29Updated 3 weeks ago
- (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆69Updated last year
- Binding pocket optimization based on force fields and docking scoring functions☆33Updated 3 months ago
- Screening protocol with AUTODOCK-GPU☆12Updated 2 years ago
- Package for storage and analysis of virtual screenings run with AutoDock-GPU and AutoDock Vina☆48Updated last week
- Google Colab notebooks for running molecular dynamics simulations with GROMACS☆33Updated last year
- ☆65Updated last year
- ☆91Updated 4 months ago
- Full automation of relative protein-ligand binding free energy calculations in GROMACS☆44Updated 4 years ago
- Analysis of non-covalent interactions in MD trajectories☆58Updated 5 months ago
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆70Updated 5 months ago