markovmodel / ivampnets
☆24Updated 2 years ago
Alternatives and similar repositories for ivampnets:
Users that are interested in ivampnets are comparing it to the libraries listed below
- Tools to build coarse grained models and perform simulations with OpenMM☆22Updated 2 years ago
- ☆11Updated 9 months ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 3 years ago
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆78Updated 2 months ago
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆32Updated 2 weeks ago
- Calculation of water/solvent partition coefficients with Gromacs.☆26Updated 5 months ago
- Enhanced sampling methods for molecular dynamics simulations☆36Updated 2 years ago
- Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium☆35Updated last week
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆20Updated 9 months ago
- Given an RDKit molecule that does not sanitise, correct it until it does☆38Updated 11 months ago
- ☆50Updated this week
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆19Updated last year
- Analysis framework of dissipation-corrected targeted molecular dynamics (dcTMD) simulations.☆14Updated 8 months ago
- an ultra-fast and accurate program for deterministic protein sidechain packing☆29Updated last month
- ☆43Updated 3 years ago
- A fast solver for large scale MBAR/UWHAM equations☆38Updated 6 months ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆13Updated 2 months ago
- ☆15Updated 2 years ago
- Get access to our MD data files.☆28Updated last year
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆58Updated last year
- ☆25Updated last year
- Package for consistent reporting of relative free energy results☆38Updated 2 months ago
- ☆33Updated 6 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆45Updated last week
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆15Updated last year
- Adding hydrogens to molecular models☆40Updated 4 months ago
- ☆69Updated 8 months ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆52Updated 10 months ago
- ☆39Updated 2 years ago
- Statistical models for biomolecular dynamics☆38Updated 5 months ago