markovmodel / ivampnets
☆24Updated last year
Alternatives and similar repositories for ivampnets:
Users that are interested in ivampnets are comparing it to the libraries listed below
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 3 years ago
- Tools to build coarse grained models and perform simulations with OpenMM☆20Updated 2 years ago
- ☆11Updated 8 months ago
- rid☆20Updated 3 years ago
- Set up relative free energy calculations using a common scaffold☆22Updated 5 months ago
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆19Updated 8 months ago
- an ultra-fast and accurate program for deterministic protein sidechain packing☆29Updated 2 months ago
- ☆43Updated 3 years ago
- ☆32Updated 5 months ago
- Python code for generating Boresch restraints from MD simulations☆19Updated 2 years ago
- ☆39Updated 2 months ago
- ☆29Updated last year
- Bayesian Multistate Bennett Acceptance Ratio Method☆13Updated last month
- MDANCE is a flexible n-ary clustering package for all applications.☆43Updated 2 weeks ago
- Enhanced sampling methods for molecular dynamics simulations☆36Updated 2 years ago
- Get access to our MD data files.☆27Updated last year
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆19Updated 11 months ago
- ☆25Updated last year
- Scripts to interface TorchANI NNP with NAMD☆30Updated last year
- Temperature generator for Replica Exchange MD simulations☆27Updated 2 years ago
- Applications of nonequilibrium candidate Monte Carlo (NCMC) to ligand binding mode sampling☆33Updated 2 years ago
- ☆69Updated 7 months ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated last year
- Data from the COVID Moonshot project☆19Updated last year
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆32Updated this week
- Automatic Mutual Information Noise Omission☆14Updated 4 months ago
- Standalone charge assignment from Espaloma framework.☆38Updated 7 months ago
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆76Updated 3 weeks ago
- ☆26Updated last week