☆25Feb 28, 2023Updated 3 years ago
Alternatives and similar repositories for ivampnets
Users that are interested in ivampnets are comparing it to the libraries listed below
Sorting:
- Get access to our MD data files.☆31Nov 22, 2023Updated 2 years ago
- Probabilistic Inference for NOvel Therapeutics☆15Feb 5, 2022Updated 4 years ago
- Helper function for Markov State Models☆11Jun 25, 2024Updated last year
- ☆16Jul 26, 2024Updated last year
- Deep learning meets molecular dynamics.☆186May 3, 2019Updated 6 years ago
- Markov State Models on the Muller potential: a MSMBuilder Tutorial☆12Mar 18, 2013Updated 13 years ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆19Jun 6, 2023Updated 2 years ago
- Clustering tool for biomolecular structural ensembles and data in general.☆10Aug 24, 2020Updated 5 years ago
- Robust and stable clustering of molecular dynamics simulation trajectories.☆19Sep 2, 2022Updated 3 years ago
- Simulation-Enabled Estimation of Kinetic Rates - Version 2☆35Dec 10, 2025Updated 3 months ago
- Molecular visualization for MDAnalysis with MolecularNodes in Blender☆18Mar 30, 2025Updated 11 months ago
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆38Feb 27, 2026Updated 3 weeks ago
- Building and analyzing residue interaction networks with cofactors (includes tutorial).☆18Mar 31, 2021Updated 4 years ago
- Temperature generator for Replica Exchange MD simulations☆29Dec 14, 2022Updated 3 years ago
- Multi-Level DBSCAN: A Hierarchical Density-Based Clustering Method for Analyzing Molecular Dynamics Trajectories☆13Dec 6, 2020Updated 5 years ago
- Assorted Python Scripts to accompany the gmx analysis tools☆12Jul 16, 2019Updated 6 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Feb 11, 2021Updated 5 years ago
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated 8 months ago
- PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.☆148Feb 12, 2025Updated last year
- Hückel model + JAX☆13Oct 13, 2022Updated 3 years ago
- Real time monitoring and visualization of Amber MD simulations☆16Feb 6, 2020Updated 6 years ago
- WESTPA: The Weighted Ensemble Simulation Toolkit with Parallelization and Analysis☆212Mar 11, 2026Updated last week
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- the simple alchemistry library☆235Jan 23, 2026Updated last month
- Statistical models for biomolecular dynamics☆42May 8, 2025Updated 10 months ago
- Tautomer ratios in solution☆28Sep 20, 2021Updated 4 years ago
- Natural language computational chemistry command line interface.☆46Feb 4, 2023Updated 3 years ago
- A Python toolkit for the analyis of lipid membrane simulations☆34Oct 24, 2025Updated 4 months ago
- Interactive plotting of data annotated with molecule structures.☆12Nov 30, 2023Updated 2 years ago
- Automatic Mutual Information Noise Omission☆16Oct 8, 2024Updated last year
- KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.☆34Jan 6, 2026Updated 2 months ago
- ☆32Oct 19, 2023Updated 2 years ago
- A bot that downloads all the necessary files from WeLearn and lists your assignments, filter due assignments, etc.☆24Aug 12, 2023Updated 2 years ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆26Feb 17, 2026Updated last month
- Utilities to assist with Amber Molecular Dynamics structure preparation and MMPBSA.py energy methods☆19Oct 31, 2019Updated 6 years ago
- Computation of the drug-target relative residence times from RAMD simulations☆21Aug 29, 2024Updated last year
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated 11 months ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆45May 3, 2020Updated 5 years ago
- Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation☆139Jul 21, 2023Updated 2 years ago