markovmodel / ivampnetsLinks
☆25Updated 2 years ago
Alternatives and similar repositories for ivampnets
Users that are interested in ivampnets are comparing it to the libraries listed below
Sorting:
- A simple implementation of replica exchange MD simulations for OpenMM.☆24Updated 4 years ago
- Tools to build coarse grained models and perform simulations with OpenMM☆25Updated 3 years ago
- ☆40Updated 2 years ago
- Analysis framework of dissipation-corrected targeted molecular dynamics (dcTMD) simulations.☆16Updated last month
- ☆44Updated 3 years ago
- Enhanced sampling methods for molecular dynamics simulations☆42Updated 3 years ago
- Calculation of water/solvent partition coefficients with Gromacs.☆29Updated last year
- Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium☆46Updated last month
- rid☆23Updated 4 years ago
- ☆31Updated 2 years ago
- ☆24Updated 7 months ago
- ☆29Updated 2 years ago
- Force Fields☆67Updated last year
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆40Updated 2 years ago
- ☆43Updated last year
- A fast solver for large scale MBAR/UWHAM equations☆40Updated last year
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆20Updated 9 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆60Updated last week
- Unified Free Energy Dynamics (UFED) simulations with OpenMM☆35Updated 5 months ago
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆91Updated last year
- Set up relative free energy calculations using a common scaffold☆24Updated 5 months ago
- Implementation of the SolTranNet tool utilizing the molecular transformer to predict aqueous solubility☆40Updated 4 years ago
- ☆15Updated 3 years ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- Package for consistent reporting of relative free energy results☆41Updated last week
- Bayesian Multistate Bennett Acceptance Ratio Method☆16Updated 3 months ago
- ☆35Updated last year
- Get access to our MD data files.☆30Updated 2 years ago
- ☆81Updated 3 weeks ago
- Adding hydrogens to molecular models☆55Updated 2 months ago