strodel-group / ATRANETLinks
☆14Updated last year
Alternatives and similar repositories for ATRANET
Users that are interested in ATRANET are comparing it to the libraries listed below
Sorting:
- Enhanced sampling methods for molecular dynamics simulations☆42Updated 3 years ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆43Updated 2 months ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 11 years ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 3 years ago
- Absolute solvation free energy calculations with OpenFF and OpenMM☆26Updated last year
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆24Updated 6 years ago
- Python module for identification of conserved water molecules from molecular dynamics trajectories.☆14Updated last week
- ☆19Updated last month
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆28Updated 5 years ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Updated 2 years ago
- Development of High-Throughput Polymer Network Atomistic Simulation☆25Updated last year
- ☆31Updated 2 weeks ago
- Robust Equilibration Detection☆26Updated last week
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Updated 5 years ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆16Updated 3 months ago
- User Guide for MDAnalysis☆29Updated this week
- Repository for MD methods and analysis from submitted or published work☆20Updated 2 years ago
- Conformer-Rotamer Ensemble Sampling Tool based on the xtb Semiempirical Extended Tight-Binding Program Package☆34Updated 2 months ago
- ☆44Updated last year
- Gromacs Implementation of OPLS-AAM Force field☆15Updated 7 years ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆24Updated 4 years ago
- Compare optimized geometries and energies from various force fields with respect to a QM reference.☆13Updated 4 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆74Updated 2 years ago
- ☆13Updated 6 months ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- MM and QM/MM setup for a metalloprotein using GROMACS, Chemshell and ORCA (Using the CHARMM forcefield (both in GROMACS and with Chemshe…☆24Updated last year
- Repository of the data for PLUMED Masterclass 22.3☆14Updated last year
- ☆65Updated 6 months ago
- A tutorials suite for BioSimSpace.☆34Updated 3 months ago
- Convenience functions for VMD-TCL scripting☆14Updated 6 months ago