strodel-group / ATRANETLinks
☆14Updated last year
Alternatives and similar repositories for ATRANET
Users that are interested in ATRANET are comparing it to the libraries listed below
Sorting:
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆40Updated 2 weeks ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 2 years ago
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆22Updated 5 years ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Updated 10 years ago
- Python module for identification of conserved water molecules from molecular dynamics trajectories.☆13Updated 2 weeks ago
- Enhanced sampling methods for molecular dynamics simulations☆38Updated 2 years ago
- MM and QM/MM setup for a metalloprotein using GROMACS, Chemshell and ORCA (Using the CHARMM forcefield (both in GROMACS and with Chemshe…☆23Updated last year
- ☆17Updated 10 months ago
- Convenience functions for VMD-TCL scripting☆14Updated 2 months ago
- Absolute solvation free energy calculations with OpenFF and OpenMM☆24Updated 9 months ago
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 7 years ago
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆19Updated 2 years ago
- Accelerating Metadynamics-Based Free-Energy Calculations with Adaptive Machine Learning Potentials☆15Updated 4 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- Code to support the paper: P. van Gerwen, K. R. Briling, C. Bunne, V. R. Somnath, R. Laplaza, A. Krause, C. Corminboeuf, "3DReact: Geomet…☆23Updated last month
- ☆20Updated 7 months ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆25Updated 5 years ago
- ☆30Updated last month
- Robust Equilibration Detection☆25Updated last week
- ☆65Updated last month
- Development of High-Throughput Polymer Network Atomistic Simulation☆25Updated 10 months ago
- ☆39Updated last year
- Package for consistent reporting of relative free energy results☆39Updated 2 weeks ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Updated last year
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆37Updated 2 years ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 4 years ago
- Automated calculation of cavity in molecular cages☆21Updated 6 months ago
- Reactive MD pipeline for GROMACS using Kinetic Monte Carlo / Molecular Dynamics (KIMMDY)☆13Updated 2 weeks ago
- Calculation of water/solvent partition coefficients with Gromacs.☆28Updated 11 months ago