KarrLab / datanatorLinks
Toolkit for discovering and aggregating data for whole-cell modeling
☆15Updated 3 years ago
Alternatives and similar repositories for datanator
Users that are interested in datanator are comparing it to the libraries listed below
Sorting:
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.☆67Updated 2 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆30Updated 2 years ago
- Computer-Aided Process Planner (CAPP) for Synthetic Biology Research☆11Updated 4 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- A python wrapper for the benchling api☆50Updated 5 years ago
- Methods for mapping proteomics data on 3D protein structure.☆15Updated 5 years ago
- Library of Integrated Cellular Signatures L1000☆31Updated 3 years ago
- Visually explore covariation in protein families☆39Updated 5 years ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆34Updated last year
- ECCpy is a program for EC50 calculation in python.☆44Updated 2 years ago
- BRENDA parser in python☆22Updated 3 years ago
- RetroPath2.0 to pathways☆18Updated this week
- Relaunch of the initial MetFrag project.☆19Updated this week
- MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and cover…☆23Updated last week
- Structural Bioinformatics Training Workshop & Hackathon 2017☆19Updated 7 years ago
- 🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)☆137Updated last year
- ProFET: Protein Feature Engineering Toolkit for Machine Learning☆58Updated 10 years ago
- ☆13Updated 5 years ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆21Updated 7 years ago
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆28Updated 3 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available ab…☆32Updated last year
- Reporting and exchange format for mass spectrometry quality control data☆31Updated this week
- A Python platform for Structural Bioinformatics☆57Updated 7 months ago
- ☆23Updated 7 months ago
- An automated model test system for synthetic biology models of gene expression and regulation.☆15Updated 5 years ago
- Open Source Protein REdesign for You v3☆54Updated 3 months ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆22Updated 11 months ago