Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.
☆22Feb 9, 2026Updated 3 months ago
Alternatives and similar repositories for uncovar
Users that are interested in uncovar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- An object store for scientific data☆52Mar 5, 2026Updated 2 months ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- The MG-RAST pipeline☆25Nov 30, 2022Updated 3 years ago
- 16S pipeline using qiime2 created with snakemake☆12Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 5 years ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆135Updated this week
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆31May 14, 2026Updated last week
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens…☆11Aug 1, 2023Updated 2 years ago
- ☆11Jun 29, 2023Updated 2 years ago
- ☆16Feb 5, 2025Updated last year
- VIGOR4☆22Aug 15, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13May 18, 2026Updated last week
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data☆14May 14, 2024Updated 2 years ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Jul 8, 2025Updated 10 months ago
- Simulating paired-end short sequencing reads from circular and linear genomes☆15May 14, 2021Updated 5 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- ☆19Nov 8, 2022Updated 3 years ago
- Little code snippets that do (hopefully) useful things☆23Jul 24, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mutation Identification Pipeline. Read the latest documentation:☆47Nov 18, 2025Updated 6 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- R package supporting interactive data access on BOLD☆22Oct 1, 2025Updated 7 months ago
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 2 years ago
- Methods to determine sequence element (unitig) presence/absence☆24Mar 6, 2026Updated 2 months ago
- A library for next generation genomics in Python 3☆18Jun 7, 2018Updated 7 years ago
- CiteFuse:☆28Feb 7, 2023Updated 3 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Munge GenBank files into FASTA and tab-separated metadata☆15Feb 5, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A template for standard compliant snakemake-workflows☆135Mar 27, 2026Updated last month
- reComBat package to correct batch effects☆13Jul 17, 2023Updated 2 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35May 22, 2023Updated 3 years ago
- Lecture resources for Python for Bioinformatics EANBiT course.☆20Feb 21, 2019Updated 7 years ago
- Various tips and tricks☆21May 17, 2026Updated last week
- Lifterover copy number segments in whole☆25Feb 6, 2024Updated 2 years ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago