GreenAlgorithms / GreenAlgorithms4HPC
☆47Updated 2 weeks ago
Related projects: ⓘ
- The uncompromising Snakemake code formatter☆147Updated 2 months ago
- Analyse MalariaGEN data from Python☆13Updated this week
- Cookiecutter for snakemake slurm profile☆123Updated 4 months ago
- A template for standard compliant snakemake-workflows☆86Updated last year
- A simple Snakemake profile for Slurm without --cluster-config☆130Updated 3 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆89Updated this week
- A Github action for running a Snakemake workflow☆51Updated last year
- Python library to simulate evolutionary sequence data☆78Updated 2 years ago
- open source bagel recipe; let's raise the quality of bagels worldwide☆26Updated 2 years ago
- A cookiecutter template for Snakemake workflows☆57Updated 2 years ago
- Build and maintain multiple custom conda environments all in one place.☆36Updated last year
- ☆31Updated last month
- Turn an existing conda environment into a Singularity container☆74Updated last year
- ☆17Updated 7 months ago
- Galaxy Workflows maintained by the Intergalactic Workflow Commission☆28Updated this week
- Ten great papers for wet lab biologists starting out in computational biology☆50Updated 4 years ago
- A statically generated catalog of available Snakemake workflows☆30Updated this week
- Tabular seff☆66Updated 3 weeks ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆43Updated last month
- Phylogenetics toolkit for the PyData Ecosystem☆11Updated 4 months ago
- Creates Random Coding Sequences with specified GC content and Amino Acid usage☆9Updated 2 years ago
- Convert bioinformatics file formats to Zarr☆25Updated last month
- Automated Explainable AI for Omics☆18Updated 4 months ago
- Tutorial on Bayesian phylogenetic analysis☆44Updated 7 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆71Updated 3 months ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆33Updated last year
- Monitor computational workflows in real time☆65Updated 3 months ago
- Epidemiological modeling framework for pathogen population genetics and evolution.☆16Updated 5 months ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆16Updated 11 months ago
- A short tutorial on getting started with Snakemake for workflow management☆46Updated 5 years ago