The ERGA Assembly Reports repository π
β16Oct 26, 2026Updated this week
Alternatives and similar repositories for EARs
Users that are interested in EARs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Annotation pipeline for plant genomes by PGSBβ11Nov 12, 2021Updated 4 years ago
- Automated testing of workflows against Galaxyβ10Feb 19, 2021Updated 5 years ago
- A shared database of rules for Total Perspective Vortex used by the usegalaxy.* federation.β13Oct 19, 2026Updated last week
- repository for materials to do with the VGP phase 1 data freeze, analyses, and publicationβ11Dec 23, 2025Updated 10 months ago
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.β20Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ansible playbook for managing UseGalaxy.eu infrastructure.β25Updated this week
- a precise pangenome browser combining linear and graph-based pan-genomeβ13Jul 16, 2024Updated 2 years ago
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.β18Updated this week
- pangenome from maximal blocks in an MSAβ11Sep 17, 2024Updated 2 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021β11Oct 15, 2023Updated 3 years ago
- Handy command line utility for Galaxy administratorsβ24Oct 9, 2026Updated 2 weeks ago
- A Visual Analytics Tool for Pangenomic Variant Analysisβ12Jun 23, 2025Updated last year
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.β19Sep 24, 2026Updated last month
- Annotating principal splice isoformsβ19Nov 20, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Nextflow pipeline for the production of genome assemblies from long reads and Hi-C data for the Tree of Life projectβ42Updated this week
- UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)β22Jul 30, 2026Updated 2 months ago
- Pipelines for the production of Treeval dataβ31Updated this week
- OMAmer - tree-driven and alignment-free protein assignment to sub-familiesβ23Aug 9, 2026Updated 2 months ago
- β10Oct 30, 2025Updated last year
- Host diaspora* conveniently on your Raspberry Piβ10Dec 6, 2016Updated 9 years ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).β17Sep 16, 2026Updated last month
- Library for managing Galaxy plugins - tools, index data, and workflows.β34Sep 6, 2026Updated last month
- Collection of scripts for automated SARS-CoV-2 genome surveillance.β24Sep 19, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Functional ANnoTAtion based on embedding space SImilArityβ22Sep 26, 2026Updated last month
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.β21Aug 26, 2026Updated 2 months ago
- Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.β29Oct 19, 2026Updated last week
- A tool for identification of plant long non-coding RNAs.β10Aug 8, 2023Updated 3 years ago
- Python scripts to download and grade submissions to Github Classroom assignmentsβ10Jun 14, 2018Updated 8 years ago
- β31Mar 27, 2024Updated 2 years ago
- β13Jul 24, 2026Updated 3 months ago
- AlfaPang builds pangenome graphs without alignments or references.β17Oct 16, 2026Updated last week
- ENA upload cli - script your Open Data upload to the European Nucleotide Archiveβ30Oct 19, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer β’ AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment filesβ35Oct 12, 2026Updated 2 weeks ago
- HiFi error modeler and simulator with ploidyβ12Feb 12, 2026Updated 8 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictogβ¦β13Oct 16, 2026Updated last week
- File parsing and writing code for Ensemblβ10Oct 16, 2026Updated 2 weeks ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to β¦β21Jan 14, 2026Updated 9 months ago
- OpenGL Powered Pretext Contact Map Viewerβ63Oct 22, 2026Updated last week
- β13Aug 14, 2018Updated 8 years ago