The ERGA Assembly Reports repository π
β16Aug 7, 2026Updated this week
Alternatives and similar repositories for EARs
Users that are interested in EARs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.β18Updated this week
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.β17Updated this week
- Ansible playbook for managing UseGalaxy.eu infrastructure.β25Updated this week
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)β13Jun 28, 2023Updated 3 years ago
- pangenome from maximal blocks in an MSAβ11Sep 17, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Handy command line utility for Galaxy administratorsβ24May 12, 2026Updated 2 months ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021β11Oct 15, 2023Updated 2 years ago
- Implementation of ToL genome assembly workflowsβ33Updated this week
- Annotating principal splice isoformsβ18Nov 20, 2025Updated 8 months ago
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.β19May 19, 2026Updated 2 months ago
- UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)β22Jul 30, 2026Updated last week
- OMAmer - tree-driven and alignment-free protein assignment to sub-familiesβ23Updated this week
- Functional ANnoTAtion based on embedding space SImilArityβ18Jul 23, 2026Updated 2 weeks ago
- Library for managing Galaxy plugins - tools, index data, and workflows.β34Jun 15, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python library for interacting with ENA's APIβ25Aug 10, 2021Updated 5 years ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).β17Mar 13, 2026Updated 4 months ago
- Collection of scripts for automated SARS-CoV-2 genome surveillance.β24Sep 19, 2023Updated 2 years ago
- Host diaspora* conveniently on your Raspberry Piβ10Dec 6, 2016Updated 9 years ago
- Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.β29Updated this week
- A tool for evaluating long-read de novo assembly resultsβ54Aug 25, 2024Updated last year
- HiFi error modeler and simulator with ploidyβ12Feb 12, 2026Updated 5 months ago
- A tool for identification of plant long non-coding RNAs.β10Aug 8, 2023Updated 3 years ago
- List of tools included in https://usegalaxy.euβ36Updated this week
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Command Line Interface for Genomes on a Tree.β14Mar 15, 2026Updated 4 months ago
- ENA upload cli - script your Open Data upload to the European Nucleotide Archiveβ30Aug 3, 2026Updated last week
- AlfaPang builds pangenome graphs without alignments or references.β17Nov 7, 2025Updated 9 months ago
- File parsing and writing code for Ensemblβ10Apr 9, 2026Updated 4 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment filesβ35Jul 30, 2026Updated last week
- OpenGL Powered Pretext Contact Map Viewerβ63Jul 17, 2026Updated 3 weeks ago
- High performance multiplexed user fuse mountingβ20Jun 19, 2026Updated last month
- Create equal-area histograms with 'ggplot2'β10Jul 23, 2023Updated 3 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mersβ25Feb 16, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SV genotyper for long reads with a variation graphβ16Apr 15, 2026Updated 3 months ago
- TSEBRA: Transcript Selector for BRAKERβ51Apr 7, 2026Updated 4 months ago
- β13Aug 14, 2018Updated 7 years ago
- A metadata commons to store research software metadataβ47Updated this week
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualizationβ52Jul 29, 2026Updated last week
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.β38Feb 26, 2026Updated 5 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictogβ¦β13Jun 18, 2026Updated last month