Alternatives and similar repositories for surfa:

Users that are interested in surfa are comparing it to the libraries listed below

• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆63Updated this week
• braincharter / vasculature
  Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space
  ☆49Updated 2 years ago
• dmritrekker / trekker
  dMRI based fiber tracking using parallel transport tractography
  ☆20Updated this week
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆62Updated this week
• BIC-MNI / minc-toolkit-v2
  Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
  ☆50Updated last month
• neurolabusc / Clinical
  Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)
  ☆44Updated 3 years ago
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆23Updated last month
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆57Updated 3 weeks ago
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆45Updated 5 months ago
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆99Updated last month
• pBFSLab / FastCSR
  ☆28Updated last year
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆65Updated last year
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆46Updated last week
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆64Updated 5 months ago
• wwu-mmll / deepbet
  Fast brain extraction using neural networks
  ☆28Updated 5 months ago
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆48Updated this week
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆51Updated 10 months ago
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆71Updated last week
• NIST-MNI / nist_mni_pipelines
  NIST-MNI image processing pipelines
  ☆10Updated this week
• DevelopingHCP / structural-pipeline
  dHCP structural pipeline
  ☆17Updated 3 years ago
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆142Updated this week
• SlicerDMRI / SlicerDMRI
  Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
  ☆78Updated last month
• cabeen / qit
  A repository for the Quantitative Imaging Toolkit (QIT)
  ☆21Updated last year
• PennLINC / aslprep
  Preprocessing of arterial spin labeling (ASL) data
  ☆44Updated this week
• poldracklab / pydeface
  defacing utility for MRI images
  ☆113Updated last year
• Conxz / multiBrain
  A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
  ☆92Updated 2 years ago
• CoBrALab / MAGeTbrain
  Multiple Automatically Generated Templates brain segmentation algorithm
  ☆48Updated 7 months ago
• ANTsX / ANTsPyNet
  Pre-trained models and utilities for deep learning on medical images in Python
  ☆204Updated this week
• rpomponio / neuroHarmonize
  Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variabl…
  ☆85Updated this week
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆75Updated 3 years ago