freesurfer / surfa
Python utilities for medical image and surface-based analysis
☆29Updated last week
Alternatives and similar repositories for surfa:
Users that are interested in surfa are comparing it to the libraries listed below
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆62Updated this week
- niimath - a clone of fslmaths. Try the live demo:☆60Updated 2 months ago
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆65Updated this week
- dMRI based fiber tracking using parallel transport tractography☆25Updated 3 weeks ago
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆105Updated 3 months ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Updated last year
- Preprocessing of arterial spin labeling (ASL) data☆48Updated this week
- Version 2 of the minc-toolkit, uses tools based on ITK version 4.x☆53Updated 3 months ago
- QSMxT is an end-to-end software toolbox for Quantitative Susceptibility Mapping.☆42Updated this week
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆66Updated last year
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆49Updated 2 years ago
- Preprocessing of diffusion MRI☆151Updated 3 weeks ago
- Fast brain extraction using neural networks☆29Updated 7 months ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆25Updated last month
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆45Updated 3 years ago
- Processing tools for high-resolution neuroimaging☆72Updated 3 months ago
- ☆27Updated last year
- dHCP structural pipeline☆17Updated 3 years ago
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆67Updated 8 months ago
- Segmentation of the thalamus into 11 nuclei and MTT using white-matter-nulled MPRAGE MRI image contrast with support now for standard MPR…☆23Updated 3 weeks ago
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆76Updated 4 years ago
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆51Updated this week
- Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation☆25Updated 2 months ago
- ☆17Updated last year
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆47Updated 7 months ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆91Updated this week
- BIDS app wrapping recon-all from FreeSurfer☆42Updated 4 months ago
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆63Updated 4 months ago
- Check metadata and visualize neuroimages within VSCode.☆43Updated last year
- NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations☆31Updated 4 years ago