Alternatives and similar repositories for sam:

Users that are interested in sam are comparing it to the libraries listed below

• broadinstitute / rawls
  Rawls service for DSDE
  ☆26Updated this week
• broadinstitute / firecloud-orchestration
  ☆31Updated this week
• DataBiosphere / leonardo
  Notebook service
  ☆44Updated this week
• fulcrumgenomics / dagr
  A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
  ☆69Updated 2 years ago
• DataBiosphere / terra-workspace-manager
  ☆14Updated this week
• bioscala / bioscala
  Bioinformatics for the Scala programming language
  ☆109Updated 11 months ago
• shadaj / genalgo
  A bioinformatics library for Scala
  ☆12Updated 7 years ago
• bigdatagenomics / bdg-formats
  Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
  ☆39Updated 2 months ago
• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆125Updated 2 years ago
• BD2KGenomics / conductor
  Efficient, distributed downloads of large files from S3 to HDFS using Spark.
  ☆17Updated 7 years ago
• fulcrumgenomics / fgbio
  Tools for working with genomic and high throughput sequencing data.
  ☆317Updated this week
• hammerlab / spark-bam
  Load genomic BAM files using Apache Spark
  ☆21Updated 6 years ago
• bigdatagenomics / avocado
  A Variant Caller, Distributed. Apache 2 licensed.
  ☆71Updated 5 years ago
• projectglow / glow
  An open-source toolkit for large-scale genomic analysis
  ☆274Updated 3 weeks ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆96Updated 6 years ago
• TileDB-Inc / TileDB-VCF
  Efficient variant-call data storage and retrieval library using the TileDB storage library.
  ☆91Updated last week
• HadoopGenomics / Hadoop-BAM
  Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
  ☆70Updated 2 years ago
• aehrc / VariantSpark
  machine learning for genomic variants
  ☆143Updated 3 months ago
• broadinstitute / firecloud-ui
  FireCloud user interface for web browsers.
  ☆19Updated last week
• dockstore / dockstore
  An app store for scientific workflows, tools, notebooks, and services
  ☆122Updated this week
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆180Updated 5 months ago
• stjudecloud / oliver
  An opinionated Cromwell orchestration manager.
  ☆40Updated last year
• lindenb / jbwa
  Java Bindings (JNI) for bwa
  ☆19Updated 8 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• rabix / bunny
  [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
  ☆74Updated 4 years ago
• hammerlab / guacamole
  Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly
  ☆84Updated 7 years ago
• fulcrumgenomics / sopt
  An argument parsing library for Scala
  ☆10Updated last month
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆111Updated 2 years ago
• samtools / htsjdk
  A Java API for high-throughput sequencing data (HTS) formats.
  ☆285Updated this week
• opencb / hpg-bigdata
  This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
  ☆17Updated 6 years ago