Alternatives and similar repositories for sam:

Users that are interested in sam are comparing it to the libraries listed below

• broadinstitute / firecloud-orchestration
  ☆31Updated this week
• broadinstitute / rawls
  Rawls service for DSDE
  ☆26Updated this week
• DataBiosphere / leonardo
  Notebook service
  ☆44Updated this week
• fulcrumgenomics / dagr
  A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
  ☆69Updated 2 years ago
• bioscala / bioscala
  Bioinformatics for the Scala programming language
  ☆110Updated last year
• BD2KGenomics / conductor
  Efficient, distributed downloads of large files from S3 to HDFS using Spark.
  ☆17Updated 7 years ago
• broadinstitute / firecloud-ui
  FireCloud user interface for web browsers.
  ☆19Updated last month
• DataBiosphere / terra-workspace-manager
  ☆14Updated this week
• shadaj / genalgo
  A bioinformatics library for Scala
  ☆12Updated 7 years ago
• bigdatagenomics / bdg-formats
  Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
  ☆40Updated last week
• hammerlab / spark-bam
  Load genomic BAM files using Apache Spark
  ☆21Updated 6 years ago
• aehrc / VariantSpark
  machine learning for genomic variants
  ☆142Updated 4 months ago
• bigdatagenomics / avocado
  A Variant Caller, Distributed. Apache 2 licensed.
  ☆71Updated 5 years ago
• DataBiosphere / terra-ui
  Web user interface for the Terra platform
  ☆53Updated this week
• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆125Updated 2 years ago
• projectglow / glow
  An open-source toolkit for large-scale genomic analysis
  ☆273Updated this week
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆40Updated last week
• disq-bio / disq
  A library for manipulating bioinformatics sequencing formats in Apache Spark
  ☆32Updated last week
• opencb / hpg-bigdata
  This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
  ☆17Updated 6 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• HadoopGenomics / Hadoop-BAM
  Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
  ☆70Updated 2 years ago
• hammerlab / guacamole
  Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly
  ☆84Updated 7 years ago
• ddcap / halvade
  New url: https://github.com/biointec/halvade
  ☆19Updated 7 years ago
• fulcrumgenomics / fgbio
  Tools for working with genomic and high throughput sequencing data.
  ☆321Updated this week
• wookietreiber / sbt-scaliterate
  sbt plugin for literate Scala programming
  ☆20Updated 7 years ago
• fulcrumgenomics / sopt
  An argument parsing library for Scala
  ☆10Updated 3 weeks ago
• citiususc / BigBWA
  BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).
  ☆31Updated 2 years ago
• TileDB-Inc / TileDB-VCF
  Efficient variant-call data storage and retrieval library using the TileDB storage library.
  ☆92Updated this week
• sbt / librarymanagement
  librarymanagement module for sbt
  ☆50Updated this week
• lightbend / genjavadoc
  A compiler plugin for generating doc’able Java source from Scala source
  ☆59Updated last month