Alternatives and similar repositories for terra-workspace-manager

Users that are interested in terra-workspace-manager are comparing it to the libraries listed below

• DataBiosphere / leonardo
  Notebook service
  ☆44Updated last week
• broadinstitute / rawls
  Rawls service for DSDE
  ☆26Updated 2 weeks ago
• broadinstitute / sam
  workbench identity and access management
  ☆43Updated 3 weeks ago
• broadinstitute / firecloud-orchestration
  ☆31Updated this week
• aehrc / VariantSpark
  machine learning for genomic variants
  ☆147Updated last week
• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆126Updated 3 years ago
• fulcrumgenomics / fgbio
  Tools for working with genomic and high throughput sequencing data.
  ☆352Updated this week
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆515Updated last month
• projectglow / glow
  An open-source toolkit for large-scale genomic analysis
  ☆293Updated last week
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆99Updated 8 months ago
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆200Updated 2 months ago
• openwdl / learn-wdl
  Educational materials for learning WDL
  ☆131Updated last year
• fulcrumgenomics / dagr
  A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
  ☆69Updated 3 years ago
• TileDB-Inc / TileDB-VCF
  Efficient variant-call data storage and retrieval library using the TileDB storage library.
  ☆102Updated last week
• broadgsa / gatk
  Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…
  ☆299Updated 7 years ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆99Updated 8 years ago
• nf-core / tools
  Python package with helper tools for the nf-core community.
  ☆287Updated this week
• bioscala / bioscala
  Bioinformatics for the Scala programming language
  ☆114Updated 5 months ago
• biocommons / hgvs
  Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature…
  ☆287Updated last month
• sourmash-bio / sourmash
  Quickly search, compare, and analyze genomic and metagenomic data sets.
  ☆536Updated last week
• brentp / somalier
  fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
  ☆302Updated 2 months ago
• googlegenomics / gcp-variant-transforms
  GCP Variant Transforms
  ☆141Updated 7 months ago
• samtools / htsjdk
  A Java API for high-throughput sequencing data (HTS) formats.
  ☆293Updated 2 weeks ago
• nanoporetech / bonito
  A PyTorch Basecaller for Oxford Nanopore Reads
  ☆428Updated 2 weeks ago
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆311Updated 3 weeks ago
• brentp / mosdepth
  fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
  ☆814Updated 2 months ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆109Updated 3 years ago
• pcingola / SnpEff
  ☆301Updated this week
• brentp / goleft
  goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
  ☆224Updated 4 months ago
• OpenGene / AfterQC
  Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
  ☆212Updated 5 years ago