Alternatives and similar repositories for RNAseq-R

Users that are interested in RNAseq-R are comparing it to the libraries listed below

• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆21Updated 3 weeks ago
• bioinformatics-core-shared-training / cruk-summer-school-2018
  Summer school course materials collection
  ☆26Updated 6 years ago
• oganm / geneSynonym
  Quick access to gene synonyms
  ☆28Updated last week
• stevekm / Bioinformatics
  Bioinformatics analysis scripts, workflows, general code examples
  ☆55Updated 4 years ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆29Updated 3 months ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆39Updated 2 weeks ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆35Updated 2 years ago
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆32Updated 5 months ago
• nghiavtr / FuSeq
  ☆33Updated 3 years ago
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆46Updated last week
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆26Updated 2 years ago
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆56Updated 2 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 4 years ago
• sirselim / illumina450k_filtering
  A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
  ☆30Updated last year
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 6 years ago
• hbctraining / Intro-to-variant-analysis
  ☆31Updated last month
• drisso / peixoto2015_tutorial
  Tutorial to reproduce the analysis of Peixoto et al. (2015)
  ☆9Updated 9 years ago
• costasilvati / consexpression
  Tool for RNA-Seq analysis.
  ☆39Updated 3 years ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 6 years ago
• hidelab / diffcoexp
  Differential coexpression analysis
  ☆15Updated last year
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆25Updated last year
• Nik-Zainal-Group / signature.tools.lib
  R package containing useful functions for mutational signature analysis
  ☆82Updated this week
• NBISweden / GUESSmyLT
  An efficient way to guess the library type of your RNA-Seq data.
  ☆31Updated 2 years ago
• 123xiaochen / VCFshiny
  ☆29Updated 8 months ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆68Updated 4 months ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 3 years ago
• Shians / Glimma
  Glimma R package
  ☆50Updated 9 months ago