COMBINE-Australia / RNAseq-RLinks
RNAseq analysis in R workshop, originally taught: http://combine-australia.github.io/2016-05-11-RNAseq/
☆23Updated 4 years ago
Alternatives and similar repositories for RNAseq-R
Users that are interested in RNAseq-R are comparing it to the libraries listed below
Sorting:
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆55Updated 2 years ago
- ☆73Updated 3 years ago
- Summer school course materials collection☆27Updated 7 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- DNA methylation analysis notes from Ming Tang☆92Updated 6 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆29Updated last year
- RNA-seq workflow: exploratory analysis and differential expression☆80Updated 2 years ago
- ☆56Updated 2 weeks ago
- An interactive web-tool for RNA-seq analysis☆70Updated 9 months ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆88Updated 10 months ago
- R package for genomic feature analysis and visualization☆79Updated 7 months ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 6 years ago
- ☆33Updated 6 months ago
- Reduce + Visualize Gene Ontology☆34Updated 3 months ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- Intro to Shell for Bioinformatics - with STG examples☆28Updated 9 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated last month
- An R interface to the MEME Suite☆53Updated 5 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- GENome Organisation Visual Analytics☆81Updated 10 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Differential Gene Correlation Analysis☆47Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated last month
- ☆72Updated 2 years ago
- R package containing useful functions for mutational signature analysis☆86Updated last week
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Updated last year