CIMCB / cimcbLinks
cimcb is a package containing the necessary tools for the statistical analysis of untargeted and targeted metabolomics data.
☆10Updated 2 years ago
Alternatives and similar repositories for cimcb
Users that are interested in cimcb are comparing it to the libraries listed below
Sorting:
- Official Edison Lab toolboxes and scripts for analyzing metabolomics data.☆14Updated 2 years ago
- Reconstruction algorithms for Python☆25Updated 8 months ago
- Realtime quality control for mass spectrometry data acquisition☆16Updated 8 months ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆16Updated 7 months ago
- ☆12Updated 2 months ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆34Updated last year
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- Variational autoencoders learn universal latent representations of metabolomics data (supplementary code)☆13Updated 3 years ago
- https://cimcb.github.io/MetabWorkflowTutorial/☆28Updated 2 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆42Updated this week
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆23Updated last year
- Data Integration tool utilizing network information for predictive analyses☆16Updated last month
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆28Updated last year
- Tool for estimating growth rates from microbial growth curves☆30Updated 3 years ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Updated last year
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Updated 4 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Updated 4 years ago
- Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"☆43Updated 2 years ago
- Python-based framework for computational immunomics☆13Updated last year
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆51Updated 3 years ago
- Converting LC−MS-based Untargeted Metabolomics Data into Image towards Clinical Diagnosis☆12Updated 2 years ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆19Updated 3 months ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆48Updated last month
- Python toolbox for multi-omics data mapping and analysis☆24Updated 2 years ago
- ☆19Updated 3 months ago
- Visualization and analysis platform for metabolic data and network pattern recognition☆39Updated 3 months ago
- ☆81Updated 6 months ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆21Updated 3 weeks ago