Bio-OS / bioos

Related projects ⓘ

Alternatives and complementary repositories for bioos

• JoshuaChou2018 / AutoBA
  An AI Agent for Fully Automated Multi-omic Analyses
  ☆122Updated 3 weeks ago
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆107Updated 2 months ago
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆121Updated 3 months ago
• feifei9606 / Awesome-Bioinformatics-CN
  生物信息学软件，资源和工具库的精选列表
  ☆97Updated 2 years ago
• OpenGene / scrnapip
  A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
  ☆103Updated last year
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆129Updated this week
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆86Updated 2 years ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆94Updated last week
• YeoLab / eCLIP
  ☆38Updated 2 years ago
• Sentieon / sentieon-scripts
  Helper scripts for biological data processing from Sentieon
  ☆63Updated last month
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆74Updated last week
• pzweuj / pzweuj.github.io
  Go to
  ☆37Updated this week
• StanfordBioinformatics / SJM
  Simple Job Manager
  ☆57Updated 7 years ago
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆28Updated 3 years ago
• xjtu-omics / msisensor-pro
  Microsatellite Instability (MSI) detection using high-throughput sequencing data.
  ☆103Updated 2 weeks ago
• YangLab / CIRCexplorer2
  circular RNA analysis toolset
  ☆77Updated 2 months ago
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆57Updated last year
• YichaoOU / HemTools
  HemTools: a collection of NGS pipelines and bioinformatic analyses
  ☆66Updated this week
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆45Updated 10 months ago
• HussainAther / awesome-alternative-splicing
  Alternative splicing resource
  ☆51Updated 6 years ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆62Updated 2 years ago
• oncokb / oncokb-annotator
  Annotates variants in MAF with OncoKB annotation.
  ☆123Updated last month
• BioinfoUNIBA / REDItools2
  ☆53Updated 3 years ago
• canceromics / MeRIPseqPipe
  MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  ☆31Updated 6 months ago
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆30Updated this week
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆37Updated last week
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆64Updated this week
• griffithlab / pVACtools
  ☆144Updated last month
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆218Updated 4 months ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆140Updated 2 months ago