Alternatives and similar repositories for bioos

Users that are interested in bioos are comparing it to the libraries listed below

• YeoLab / eCLIP
  ☆37Updated 2 years ago
• canceromics / MeRIPseqPipe
  MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  ☆38Updated last year
• feifei9606 / Awesome-Bioinformatics-CN
  生物信息学软件，资源和工具库的精选列表
  ☆111Updated 3 years ago
• OpenGene / scrnapip
  A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
  ☆109Updated last year
• biolxy / handbook-cancer-genomics
  my first book, Biological information analysis of cancer tumors
  ☆26Updated 3 years ago
• HussainAther / awesome-alternative-splicing
  Alternative splicing resource
  ☆56Updated 7 years ago
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆135Updated 10 months ago
• sajuukLyu / Protocols-4pub
  Multi-omics analysis protocols by Lyu.
  ☆51Updated last year
• YangLab / CIRCexplorer2
  circular RNA analysis toolset
  ☆83Updated 9 months ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆78Updated 2 years ago
• StanfordBioinformatics / SJM
  Simple Job Manager
  ☆59Updated 7 years ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆91Updated 2 years ago
• BGI-flexlab / SOAPnuke
  A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files
  ☆109Updated last year
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆110Updated 9 months ago
• zhangwei2015 / IMonitor
  This script use to analyze the immune repertoire sequenced by high throughtput sequencing
  ☆25Updated 3 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 4 months ago
• xryanglab / RiboMiner
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
  ☆18Updated 5 months ago
• VRam142 / combinatorialHiC
  Scripts + resources for analyzing combinatorial Hi-C data
  ☆30Updated 5 years ago
• ai4nucleome / BioMaster
  ☆56Updated last month
• xjtu-omics / msisensor-pro
  Microsatellite Instability (MSI) detection using high-throughput sequencing data.
  ☆109Updated 2 months ago
• pzweuj / pzweuj.github.io
  Go to
  ☆36Updated this week
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆60Updated last year
• YichaoOU / HemTools
  HemTools: a collection of NGS pipelines and bioinformatic analyses
  ☆71Updated 2 months ago
• ZjGaothu / EpiGePT
  EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics
  ☆25Updated this week
• mikessh / vdjtools
  [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data
  ☆138Updated last year
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆199Updated this week
• y9c / pseudoU-BIDseq
  🧪 Pipeline for detecting Ψ modification
  ☆18Updated last year
• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆49Updated last year
• Tong-Chen / NGS
  Scripts for next generation sequencing
  ☆48Updated 5 years ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆119Updated last week