commandline tool for fast computation and correction of GC biases in WGS DNA datasets from liquid biopsy samples taking the fragment length into account
☆10Nov 20, 2025Updated 11 months ago
Alternatives and similar repositories for GCparagon
Users that are interested in GCparagon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Oct 16, 2025Updated last year
- Collection of fragmentomic analysis scripts☆14Jul 3, 2024Updated 2 years ago
- R package for CRAG☆12Feb 17, 2025Updated last year
- cfDNA cell type of origin estimation☆36Oct 19, 2023Updated 3 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- ☆14Jul 20, 2026Updated 3 months ago
- Profiling of transcription factor binding sites in cell-free DNA☆27Apr 9, 2020Updated 6 years ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆45Oct 26, 2026Updated 2 weeks ago
- An et al. Nature Communications 2023☆15Jan 19, 2023Updated 3 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆80Jul 22, 2020Updated 6 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 8 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆32Jul 27, 2023Updated 3 years ago
- ☆18Aug 29, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Jun 14, 2023Updated 3 years ago
- ☆33Mar 5, 2024Updated 2 years ago
- ☆17May 25, 2026Updated 5 months ago
- Scripts for analyses in the Griffin manuscript☆13Dec 14, 2022Updated 3 years ago
- seqpac - A Framework for small RNA analysis in R using Sequence-Based Counts☆10Oct 12, 2026Updated 3 weeks ago
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆41Oct 30, 2026Updated last week
- ☆12Dec 18, 2020Updated 5 years ago
- Multi-view Factorization AutoEncoder with Network Constraints for Multi-omic Integrative Analysis☆12Sep 27, 2018Updated 8 years ago
- HTSlib high-throughput sequencing library as an R package☆11Apr 28, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Visualizations of Keras models: architecture, training process, intermediate results, and so on.☆18Jan 22, 2021Updated 5 years ago
- Course: Algorithms for Data Science☆16Feb 7, 2020Updated 6 years ago
- fRagmentomics is a standardized and user-friendly R package that integrates fragmentomic feature extraction with fragment-level mutation …☆13Updated this week
- Inferring expressed genes by whole-genome sequencing of plasma DNA☆20May 23, 2016Updated 10 years ago
- Rapid unbiased fragmentomics analysis of cfDNA☆11Jan 31, 2024Updated 2 years ago
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆20Jan 16, 2023Updated 3 years ago
- cfDNA analysis workflow☆23Jun 15, 2023Updated 3 years ago
- ☆10Nov 18, 2022Updated 3 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆18Nov 5, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 11 years ago
- A minimal doc on Tensorflow 2.0 that is just enough to make you dangerous.☆24Sep 13, 2019Updated 7 years ago
- cfSNV: An R tool of sensitively detecting tumor mutations from cell-free DNA in blood☆15Apr 29, 2023Updated 3 years ago
- What's New in TensorFlow 2.0, Published by Packt☆16Jan 30, 2023Updated 3 years ago
- A Scheduling Problem in Prolog☆13Feb 3, 2016Updated 10 years ago
- iqplot: Bokeh plots with one quantitative variable☆11Oct 31, 2026Updated last week
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆21Jan 13, 2021Updated 5 years ago
Are these results useful?