zhanghaicang / DeepFolding
Protein contacts prediction using deep learning models
☆77Updated 5 years ago
Alternatives and similar repositories for DeepFolding:
Users that are interested in DeepFolding are comparing it to the libraries listed below
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆114Updated 3 years ago
- ☆34Updated 3 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆57Updated 3 years ago
- A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction☆79Updated 4 years ago
- ☆29Updated 4 years ago
- PointSite: a point cloud segmentation tool for identification of protein ligand binding atoms☆55Updated 2 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆78Updated 4 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- Learning protein representation for rigid-body docking☆22Updated 5 years ago
- Database of Interacting Protein Structures (DIPS)☆99Updated last year
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Updated 6 years ago
- Computes a molecular graph for protein structures.☆58Updated last week
- Recurrent Geometric Network in Pytorch☆29Updated 4 years ago
- Paratope Prediction using Deep Learning☆59Updated last year
- ☆102Updated 2 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆85Updated 3 years ago
- DLSCORE: A deep learning based scoring function for predicting protein-ligand binding affinity☆49Updated 2 years ago
- Improved antibody structure-based design using inverse folding☆112Updated this week
- Python 3 implementation of Jinbo Xu's paper "Distance-based protein folding powered by deep learning", PNAS August 20, 2019 116 (34)☆20Updated 2 years ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated last year
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21Updated 5 years ago
- OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling☆21Updated 4 years ago
- Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.☆73Updated 2 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆81Updated 3 years ago
- PyTorch library of layers acting on protein representations☆118Updated 9 months ago
- ☆81Updated 7 months ago
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆37Updated 4 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Updated last month