wnd-charm / wnd-charmLinks
A generalized pattern recognition system for images developed by the Goldberg group at the NIH/NIA.
☆96Updated 3 years ago
Alternatives and similar repositories for wnd-charm
Users that are interested in wnd-charm are comparing it to the libraries listed below
Sorting:
- ☆51Updated 7 years ago
- A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)☆40Updated 4 years ago
- This package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but sho…☆12Updated 4 years ago
- A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.☆45Updated last year
- Mobile point-of-care lab diagnostics☆27Updated 9 years ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆166Updated 6 months ago
- Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.☆44Updated 7 years ago
- Repository for my research on generative modelling of cell images☆14Updated 3 years ago
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Updated 8 years ago
- Curated metadata for all studies published in the Image Data Resource☆16Updated 5 months ago
- Applying deep learning for very early recognition of pluripotent stem cell differentiation☆11Updated 6 years ago
- Collaborative Annotation Toolkit for Massive Amounts of Image Data☆197Updated last week
- Automatic segmentation of electron microscopy volumes☆78Updated 5 years ago
- U-net based segmentation of nuclei in microscopy images☆53Updated 7 years ago
- ☆92Updated 2 years ago
- Integrated Cell project implemented in pytorch☆44Updated 3 months ago
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- This repository provides cytogenetics related datasets to investigate the semantic segmentation☆35Updated 3 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 4 years ago
- ilastik-shell, applets, and workflows to string them together.☆388Updated this week
- Deprecated: Read and write image data from and to TIFF files.☆62Updated 7 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Updated 3 years ago
- Documentations of BigNeuron Project progress☆24Updated 9 years ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆33Updated 7 years ago
- OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …☆214Updated last week
- Distributed Proofreading of Automatic Segmentations☆15Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- A web application for classifying objects☆29Updated 4 years ago
- ☆40Updated 5 years ago