Alternatives and similar repositories for python-workshop-image-processing

Users that are interested in python-workshop-image-processing are comparing it to the libraries listed below

• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆116Updated 3 years ago
• shntnu / cytomining-hackathon-wiki
  CytoData 2016 – origin story
  ☆18Updated 7 years ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• CellCognition / cecog
  A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
  ☆44Updated last year
• theislab / deepflow
  This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.
  ☆33Updated 7 years ago
• kundajelab / cs273b
  CS273B Deep Learning for Genomics Course Materials
  ☆33Updated 4 years ago
• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆44Updated 2 years ago
• eiriniar / CellCnn
  Representation Learning for detection of phenotype-associated cell subsets
  ☆65Updated 4 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 6 years ago
• IDR / idr-metadata
  Curated metadata for all studies published in the Image Data Resource
  ☆16Updated last week
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• CovertLab / DeepCell
  ☆49Updated 7 years ago
• IDR / idr-notebooks
  Jupyter Notebooks for the Image Data Resource
  ☆18Updated 2 years ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆67Updated last week
• cooperlab / TCGAIntegrator
  Python utilities for building integrated views of TCGA data.
  ☆32Updated 7 years ago
• okraus / DeepLoc
  This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…
  ☆50Updated 8 years ago
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆27Updated 4 years ago
• samocooper / nuclitrack
  A python developed graphical user interface for tracking cell nuclei
  ☆9Updated 7 years ago
• greenelab / DAPS
  Denoising Autoencoders for Phenotype Stratification
  ☆41Updated 6 years ago
• CellProfiler / CellProfiler-Analyst
  Open-source software for exploring and analyzing large, high-dimensional image-derived data.
  ☆156Updated 11 months ago
• AllenCellModeling / torch_integrated_cell
  ☆46Updated 6 years ago
• brikeats / Cell-Tracking
  Python scripts for tracking cells in fluorescent microscopy.
  ☆11Updated 7 years ago
• psteinb / b3get
  a python module to download Broad Bioimage Benchmark Collection images
  ☆24Updated 6 years ago
• cognoma / cancer-data
  TCGA data acquisition and processing for Project Cognoma
  ☆20Updated 7 years ago
• ppsp-team / StratiPy
  Graph regularized nonnegative matrix factorization (GNMF) in Python
  ☆45Updated 5 years ago
• PathologyDataScience / HistomicsML
  An interactive machine learning framework for large histopathology images.
  ☆21Updated last year
• cytodata / cytodata-hackathon-2018
  Ideas, code and results of the 2018 CytoData hackathon
  ☆11Updated last year
• yangzi4 / iNMF
  Source code for integrative nonnegative matrix factorization
  ☆19Updated 7 years ago
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆23Updated 2 years ago
• biocompibens / SME
  Smooth 2D manifold extraction from 3D image stack
  ☆21Updated 7 years ago