karinsasaki / python-workshop-image-processing
Using Python for image processing and analysis
☆32Updated 7 years ago
Alternatives and similar repositories for python-workshop-image-processing:
Users that are interested in python-workshop-image-processing are comparing it to the libraries listed below
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆28Updated last month
- CytoData 2016 – origin story☆18Updated 7 years ago
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- Python scripts for tracking cells in fluorescent microscopy.☆11Updated 7 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- Legacy project superseded by https://github.com/morphonets/SNT☆11Updated 3 years ago
- Methods for Image-Based Cell Profiling☆50Updated 9 months ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆31Updated 7 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 6 months ago
- PSFj - Know your microscope fluorescence☆21Updated 4 years ago
- imaging demos☆9Updated 2 years ago
- A python developed graphical user interface for tracking cell nuclei☆9Updated 7 years ago
- ☆40Updated 4 years ago
- A general illumination correction method for optical microscopy.☆38Updated 3 years ago
- Python nd2 reader based on the ND2 SDK☆16Updated 3 years ago
- Easily read and write ome-tiff images in python☆26Updated 9 months ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 4 months ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Updated 9 years ago
- ☆19Updated 2 weeks ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- Integrated Cell project implemented in pytorch☆44Updated last year
- Example CellProfiler pipelines.☆13Updated 2 years ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 3 years ago
- A toolkit to quantify cell dynamics in living tissues☆11Updated 6 years ago