whitehead / plaac
Prion-Like Amino Acid Composition
☆16Updated last year
Related projects ⓘ
Alternatives and complementary repositories for plaac
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 6 months ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆55Updated 4 years ago
- Annotating principal splice isoforms☆14Updated last month
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆48Updated 6 years ago
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆23Updated 5 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆74Updated 7 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated 2 months ago
- Fully automated generation of UCSC assembly hubs☆33Updated last month
- http://www.combio.pl/alfree☆22Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆26Updated last week
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆30Updated 2 months ago
- ☆26Updated last year
- Get, parse, and extract information from the SRA metadata files☆36Updated 2 years ago
- BigWig and BAM utilities☆92Updated 7 months ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆46Updated 5 years ago
- Parse GFF3 into Pandas dataframes☆26Updated 8 months ago
- Merging paired-end reads and removing adapters☆30Updated 4 years ago
- Fast and accurate sequence demultiplexing☆26Updated 3 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆67Updated 7 months ago
- ☆33Updated 9 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆21Updated 2 months ago
- gatk4 RNA variant calling pipeline☆37Updated last month
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆52Updated 6 months ago
- Reference-guided multiple sequence alignment of viral genomes☆61Updated 2 months ago
- Useful tools for working with Salmon output☆35Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆76Updated 3 months ago