EpistasisLab / ClinicalDataSources
Open or Easy Access Clinical Data Sources for Biomedical Research
☆171Updated 8 years ago
Alternatives and similar repositories for ClinicalDataSources:
Users that are interested in ClinicalDataSources are comparing it to the libraries listed below
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆247Updated 4 years ago
- ☆69Updated 3 years ago
- Repository for Med2Vec project☆219Updated 6 years ago
- A torch package for learning diagnosis models from temporal patient data.☆113Updated 7 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Patient2Vec: A Personalized Interpretable Deep Representation of the Longitudinal Electronic Health Record☆106Updated 6 years ago
- ☆30Updated 7 years ago
- Python library for hierarchy of ICD9 Codes☆103Updated 6 years ago
- Visualization of electronic medical records or other sequence event data.☆93Updated 5 years ago
- An information extraction system for free-text eligibility criteria☆36Updated 6 years ago
- Mapping the MIMIC-III database to the OMOP schema☆131Updated 10 months ago
- ☆98Updated last year
- ☆96Updated 2 years ago
- Predicting 30-day ICU readmissions from the MIMIC-III database☆84Updated 6 years ago
- ☆52Updated 4 years ago
- This repository contains data and code for the paper"Comparing deep learning and concept extraction based methods for patient phenotyping…☆21Updated 6 years ago
- [in development]☆37Updated 3 years ago
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆234Updated 4 years ago
- A Deep Dynamic Memory Model for Predictive Medicine☆70Updated 6 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆64Updated 6 months ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆107Updated last year
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆99Updated 4 years ago
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- Introduction to MIMIC-III, the Critical Care Database☆86Updated 7 years ago
- Simple RNN (Gated Recurrent Units) for predicting a diagnosis☆68Updated 8 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆28Updated 7 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated this week
- ☆38Updated 2 years ago