Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
☆327Oct 7, 2025Updated 6 months ago
Alternatives and similar repositories for pyGeno
Users that are interested in pyGeno are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Cutest Deep Learning Framework which is also a wonderful Declarative Language☆150May 29, 2018Updated 7 years ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆400Apr 7, 2026Updated last week
- Adapters for trimming☆30Jan 30, 2019Updated 7 years ago
- Search public databases for given genotypic information☆12Mar 21, 2018Updated 8 years ago
- 3D Genome Browser☆32Jan 22, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.☆3,673Mar 19, 2026Updated 3 weeks ago
- python access to UCSC genomes database☆136Aug 27, 2020Updated 5 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Dec 23, 2023Updated 2 years ago
- Python and C++ code for reading and writing genomics data.☆798Dec 9, 2021Updated 4 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,029Aug 24, 2024Updated last year
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆326Mar 6, 2025Updated last year
- Efficient pythonic random access to fasta subsequences☆483Mar 19, 2026Updated 3 weeks ago
- Scripts to download genomes from the NCBI FTP servers☆1,071Apr 7, 2026Updated last week
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Jan 27, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- rabaDB is a Lightweight Uncomplicated NoSQL Schemaless ORM for sqlite3☆30Nov 8, 2025Updated 5 months ago
- km : a software for RNA-seq investigation using k-mer decomposition☆10Apr 8, 2025Updated last year
- cBioPortal for Cancer Genomics☆995Updated this week
- Personal Cancer Genome Reporter (PCGR)☆275Apr 1, 2026Updated 2 weeks ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Feb 16, 2018Updated 8 years ago
- ☆15Mar 7, 2016Updated 10 years ago
- Official git repository for Biopython (originally converted from CVS)☆4,961Apr 7, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A curated list of awesome Bioinformatics libraries and software.☆3,947Apr 7, 2026Updated last week
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Official code repository for GATK versions 4 and up☆1,933Updated this week
- A workflow assembler for cancer genome analytics and informatics☆19Nov 16, 2016Updated 9 years ago
- Cloud-native genomic dataframes and batch computing☆1,054Updated this week
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- Haplotype VCF comparison tools☆462Dec 7, 2023Updated 2 years ago
- A collaboratively written review paper on deep learning, genomics, and precision medicine☆1,271Dec 25, 2022Updated 3 years ago
- Examples for the Google Genomics Pipelines API.☆50Dec 15, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An open source platform for managing and analyzing biomedical big data☆416Updated this week
- Deep learning infrastructure for genomics☆257Sep 29, 2021Updated 4 years ago
- Tools to process and analyze deep sequencing data.☆754Jul 23, 2025Updated 8 months ago
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- Image Processing with Cellular Neural Networks in Python☆543Nov 1, 2018Updated 7 years ago
- viral-ngs: command line tools and wrappers for processing raw viral genomic data☆195Apr 2, 2026Updated 2 weeks ago
- Biologically-Inspired and Machine Learning Algorithms written in Python☆49Jun 5, 2023Updated 2 years ago