Alternatives and similar repositories for pyGeno

Users that are interested in pyGeno are comparing it to the libraries listed below

• MicrosoftResearch / Azimuth
  Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
  ☆238Updated 5 years ago
• kundajelab / dragonn
  A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
  ☆262Updated 2 years ago
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆398Updated last month
• cognoma / cognoma
  Putting machine learning in the hands of cancer biologists
  ☆97Updated 7 years ago
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆298Updated last year
• bcbio / bcbio-nextgen
  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
  ☆1,016Updated last year
• lucapinello / CRISPResso
  Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
  ☆136Updated 6 years ago
• chapmanb / bcbb
  Incubator for useful bioinformatics code, primarily in Python and R
  ☆633Updated 8 months ago
• tiagoantao / bioinf-python
  Python for Bioinformatics
  ☆261Updated 5 years ago
• scikit-bio / scikit-bio
  scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…
  ☆980Updated this week
• chapmanb / cloudbiolinux
  CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
  ☆257Updated last year
• davek44 / Basset
  Convolutional neural network analysis for predicting DNA sequence activity.
  ☆267Updated 5 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• TeamErlich / dna-fountain
  DNA-Fountain
  ☆158Updated 3 months ago
• lh3 / bioawk
  BWK awk modified for biological data
  ☆630Updated 3 years ago
• 20n / act
  Computational synthetic biology: Predicting DNA edits for bioengineering
  ☆88Updated 8 years ago
• BenLangmead / comp-genomics-class
  Code and examples for JHU Computational Genomics class
  ☆303Updated 11 months ago
• biopython / biopython.github.io
  Source of biopython.org website, migrated from MediaWiki
  ☆158Updated 3 months ago
• arq5x / gemini
  a lightweight db framework for exploring genetic variation.
  ☆322Updated 5 years ago
• greenelab / adage
  Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …
  ☆61Updated 9 years ago
• biojs / biojs
  🔬A library of JavaScript components to represent biological data
  ☆501Updated 4 years ago
• phageParser / phageParser
  A project to extract CRISPR information from open genetic data.
  ☆112Updated 5 years ago
• autoprotocol / autoprotocol-python
  Python library for generating Autoprotocol
  ☆124Updated 2 years ago
• FenyoLab / PGx
  PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…
  ☆10Updated last year
• googlegenomics / readthedocs
  Documentation for the Google Genomics cookbook.
  ☆141Updated 5 years ago
• arq5x / bedtools2
  bedtools - the swiss army knife for genome arithmetic
  ☆999Updated 7 months ago
• jamescasbon / PyVCF
  A Variant Call Format reader for Python.
  ☆416Updated 2 years ago
• FunctionLab / selene
  a framework for training sequence-level deep learning networks
  ☆388Updated 9 months ago
• CDCgov / SARS-CoV-2_Sequencing
  A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
  ☆348Updated 2 years ago
• YeoLab / flotilla
  Reproducible machine learning analysis of gene expression and alternative splicing data
  ☆126Updated 2 years ago