zhao-ht / BioMazeLinks
☆22Updated 10 months ago
Alternatives and similar repositories for BioMaze
Users that are interested in BioMaze are comparing it to the libraries listed below
Sorting:
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆96Updated 3 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆95Updated 6 months ago
- Official implementation for the paper "Toward Scientific Reasoning in LLMs: Training from Expert Discussions via Reinforcement Learning"☆51Updated 7 months ago
- ☆51Updated 9 months ago
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆52Updated 7 months ago
- Retrieved Sequence Augmentation for Protein Representation Learning☆53Updated 2 years ago
- Benchmark for LLM-based Agents in Computational Biology☆68Updated 3 months ago
- BioCoder: A Benchmark for Bioinformatics Code Generation with Large Language Models https://arxiv.org/abs/2308.16458☆53Updated 5 months ago
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆39Updated 5 months ago
- A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…☆73Updated 3 months ago
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆123Updated last year
- STELLA: Self-Evolving LLM Agent for Biomedical Research☆63Updated 2 weeks ago
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆138Updated 4 months ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆106Updated 3 months ago
- ☆35Updated 2 years ago
- [COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language promp…☆71Updated last month
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆84Updated 3 months ago
- Repository for mRNA Paper and CodonBERT publication.☆141Updated last year
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆58Updated last year
- Code and data for Cell-o1.☆27Updated 4 months ago
- ☆49Updated 8 months ago
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆28Updated last week
- A Biological Foundation Model Bridging the Gap between Molecular Sequences Through Central Dogma☆28Updated 10 months ago
- ProCyon: A multimodal foundation model for protein phenotypes☆54Updated last month
- Official implementation of Panacea: A foundation model for clinical trial design, recruitment, search, and summarization.☆17Updated last year
- ☆32Updated 2 years ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆50Updated last year
- Contrastive learning harmonizing protein language models and natural language models☆40Updated last year
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆123Updated this week
- Large Language Models in Protein: A Comprehensive Survey☆166Updated 9 months ago