☆22Mar 2, 2025Updated last year
Alternatives and similar repositories for BioMaze
Users that are interested in BioMaze are comparing it to the libraries listed below
Sorting:
- A LLM-based Agent Framework for Drug Discovery☆21Jan 11, 2026Updated last month
- MetaLadder: Ascending Mathematical Solution Quality via Analogical-Problem Reasoning Transfer (EMNLP 2025)☆11Apr 18, 2025Updated 10 months ago
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆52Jun 5, 2025Updated 9 months ago
- Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".☆12Dec 27, 2023Updated 2 years ago
- Diffusion-based generative drug-like molecular editing with chemical natural language☆18Dec 22, 2024Updated last year
- Code for InstructBioMol, implementing the Nature Machine Intelligence paper "Advancing Biomolecular Understanding and Design Following Hu…☆29Aug 2, 2025Updated 7 months ago
- [ICML2025] The official implementation of "WGFormer: An SE(3)-Transformer Driven by Wasserstein Gradient Flows for Molecular Ground-State…☆32Jun 7, 2025Updated 8 months ago
- A quantitative benchmark and analysis of molecular large language models.☆18Jun 3, 2025Updated 9 months ago
- [EMNLP 2023] ReLM: Leveraging Language Models for Enhanced Chemical Reaction Prediction.☆22Jan 28, 2024Updated 2 years ago
- ☆24Apr 17, 2024Updated last year
- Autoregressive fragment-based diffusion for target-aware ligand design☆32May 23, 2024Updated last year
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆40Jan 21, 2026Updated last month
- READMEs for RxRx.ai datasets☆27Jun 6, 2025Updated 9 months ago
- Repository for AAAI 2024 paper "MolTailor: Tailoring Chemical Molecular Representation to Specific Tasks via Text Prompts"☆23Apr 20, 2024Updated last year
- Knowledge-enhanced learned representation enriches protein sequence and SMILES drug databases with a large Knowledge Graph fused from dif…☆62Feb 4, 2026Updated last month
- This repository contains information on the creation, evaluation, and benchmark models for the L+M-24 Dataset. L+M-24 will be featured as…☆30Jan 23, 2025Updated last year
- A Multi-modal Large Language Model for Molecular Science with Graph, Image, and Text☆36Oct 22, 2025Updated 4 months ago
- Code for paper Empowering Large Language Model Agents through Action Learning☆33Aug 8, 2024Updated last year
- [COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language promp…☆72Nov 23, 2025Updated 3 months ago
- Molecular Out-Of-Distribution☆39Apr 16, 2025Updated 10 months ago
- Contrastive learning harmonizing protein language models and natural language models☆39Jun 12, 2024Updated last year
- Official implementation of "Learning the language of protein structures"☆41Jun 20, 2025Updated 8 months ago
- ParaAntiProt: Paratope Prediction Using Antibody and Protein Language Models☆10Jul 16, 2024Updated last year
- Jupyter notebooks for analysis and figures related to the native organelle IP paper☆13Nov 13, 2025Updated 3 months ago
- Collection of useful React components☆10Apr 10, 2019Updated 6 years ago
- Codes for Merging Large Language Models☆35Aug 7, 2024Updated last year
- Fine-tuning Galactica and Gemma to operate on SMILES. Integrates into a molecular optimization algorithm.☆36Feb 20, 2025Updated last year
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆101Jan 11, 2025Updated last year
- This is the official repository of Prot2Token paper.☆38Jun 6, 2025Updated 9 months ago
- Code implementation for paper "Can Large Language Models Empower Molecular Property Prediction?"☆39Jul 14, 2023Updated 2 years ago
- ☆14Jan 29, 2024Updated 2 years ago
- Repo for our work "Systematic Evaluation of Large Vision-Language Models for Surgical Artificial Intelligence"☆19Jun 2, 2025Updated 9 months ago
- Services and guidelines for normalizing drug and other therapy terms☆13Feb 26, 2026Updated last week
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆11Feb 4, 2026Updated last month
- Scalable genomic analysis pipelines, written in WDL☆11Feb 24, 2026Updated last week
- Molecular Data Provider☆10Dec 17, 2025Updated 2 months ago
- Dataset and evaluation suite enabling LLM instruction-following for scientific literature understanding.☆47Mar 17, 2025Updated 11 months ago
- ☆13May 19, 2025Updated 9 months ago
- Simple R script for plotting ideograms and annotating with bed files.☆12Sep 21, 2015Updated 10 years ago