YuxingLu613 / awesome-biomedical-knowledge-graphsLinks
A curated list of Biomedical Knowledge Graph related learning materials, databases, tools and other resources
☆20Updated 2 months ago
Alternatives and similar repositories for awesome-biomedical-knowledge-graphs
Users that are interested in awesome-biomedical-knowledge-graphs are comparing it to the libraries listed below
Sorting:
- ☆51Updated 8 months ago
- A specialized LLM for study search, study screening, and data extraction from medical literature.☆25Updated 9 months ago
- The Clinical Trials Knowledge Graph☆65Updated 2 years ago
- Code and data for the publication "Structured information extraction from scientific text with large language models" by Dagdelen & Dunn …☆123Updated 2 years ago
- Papers about scientific hypothesis generation with large language models (LLMs).☆79Updated 7 months ago
- A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…☆73Updated 3 months ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆55Updated this week
- A curated list of awesome healthcare taxonomies and knowledge graphs.☆74Updated last year
- Repository for training LLaMa 2 models using the NERRE format.☆64Updated 2 years ago
- [ISMB 2024] Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models☆64Updated last year
- ☆67Updated 11 months ago
- ☆58Updated 5 years ago
- Knowledge-enhanced learned representation enriches protein sequence and SMILES drug databases with a large Knowledge Graph fused from dif…☆61Updated 3 months ago
- ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs☆76Updated last year
- ☆21Updated 10 months ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆12Updated last year
- A curated list of biomedical knowledge graphs and of resources for their construction.☆70Updated last year
- A curated list of papers on LLMs and agents for scientific research and development☆80Updated last year
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆28Updated this week
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆123Updated last year
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆95Updated 3 months ago
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Updated 2 weeks ago
- Precision Medicine Knowledge Graph (PrimeKG)☆683Updated last year
- Knowledge Graph-Guided Retrieval Augmented Generation, NAACL 2025☆108Updated 10 months ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆201Updated last year
- ☆29Updated 2 years ago
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆224Updated last year
- KGARevion: AI Agent for Knowledge-Intensive Biomedical QA☆40Updated 10 months ago
- AIONER☆62Updated last year
- Source code for "A Deep-learning System Bridging Molecule Structure and Biomedical Text with Comprehension Comparable to Human Profession…☆90Updated 2 years ago