craabreu / openmm_rigidbody_pluginLinks
Rigid Body Dynamics with OpenMM
☆12Updated 7 years ago
Alternatives and similar repositories for openmm_rigidbody_plugin
Users that are interested in openmm_rigidbody_plugin are comparing it to the libraries listed below
Sorting:
- Enhanced sampling methods for molecular dynamics simulations☆39Updated 2 years ago
- A fast solver for large scale MBAR/UWHAM equations☆40Updated last year
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆30Updated last year
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Dihedral scanner with wavefront propagation☆34Updated 5 months ago
- Partial Charge assignment for Molecular Dynamics☆22Updated 2 months ago
- OpenMM plugin to interface with PLUMED☆68Updated 7 months ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 4 years ago
- ☆39Updated last year
- Quantum Mechanical Bespoke Force Field Derivation Toolkit☆101Updated last year
- Spectral Gap Optimization of Parameters☆18Updated 5 years ago
- Robust Equilibration Detection☆25Updated 3 weeks ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆54Updated last year
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆70Updated last month
- Benchmark sets for binding free energy calculations: Perpetual review paper, discussion, datasets, and standards☆44Updated 4 years ago
- Physical validation of molecular simulations☆57Updated 2 months ago
- ASH is a Python-based computational chemistry and QM/MM environment, primarily for molecular calculations in the gas phase, explicit sol…☆86Updated last week
- Automatic Mutual Information Noise Omission☆15Updated 11 months ago
- OpenFF NAGL☆17Updated this week
- Package for consistent reporting of relative free energy results☆39Updated last week
- Best practice document for alchemical free energy calculations going to livecoms journal☆77Updated 2 weeks ago
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆33Updated 3 months ago
- Optimization of OpenFF parameters using ForceBalance and QCArchive☆12Updated 4 years ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- Transferable Double Exponential non-bonded potential for condensed phase simulations of small molecules☆23Updated 3 weeks ago
- a high-throughput alchemical free energy execution system for use with HPC, cloud, bare metal, and Folding@Home☆30Updated 2 weeks ago
- An automated framework for generating optimized partial charges for molecules☆39Updated last month
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- A python class for building a ZMatrix from a RDKit molecule. We can also do coordinate transformations between ZMatrix and Cartesian spac…☆15Updated 2 years ago
- Recipes and protocols for molecular free energy calculations using the openmmtools/perses and Open Free Energy toolkits☆14Updated last week