aramis-lab / clinicadl
Framework for the reproducible processing of neuroimaging data with deep learning methods
☆162Updated this week
Related projects ⓘ
Alternatives and complementary repositories for clinicadl
- Deep Learning tools for brain medical images☆132Updated 3 months ago
- Example download scripts for the OASIS3 project☆132Updated 3 months ago
- Pre-trained models and utilities for deep learning on medical images in Python☆201Updated 2 weeks ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆32Updated 11 months ago
- Resurces for MRI images processing and deep learning in 3D☆125Updated 2 years ago
- Classification of Alzheimer's disease status with convolutional neural networks.☆56Updated 3 years ago
- Pretrained neural networks for UK Biobank brain MRI images. SFCN, 3D-ResNet etc.☆129Updated last month
- Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhanceme…☆194Updated 6 years ago
- Automatic White Matter Bundle Segmentation☆228Updated last year
- Official Pytorch Implementation of "Generation of 3D Brain MRI Using Auto-Encoding Generative Adversarial Network" (accepted by MICCAI 20…☆126Updated 2 years ago
- A framework for joint super-resolution and image synthesis, without requiring real training data☆145Updated 7 months ago
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆75Updated last month
- Harmonization of multi-site imaging data with ComBat (Python)☆124Updated last year
- Deep Whole Brain Segmentation Using SLANT Method☆110Updated 11 months ago
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.☆134Updated 2 years ago
- A space to log issues, updates, and software related to the ATLAS (Anatomical Tracings of Lesions After Stroke) database.☆77Updated last year
- PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using…☆101Updated 3 years ago
- MRI brain extraction tool☆281Updated 3 weeks ago
- Framework for the reproducible classification of Alzheimer's disease using machine learning☆40Updated 2 years ago
- Robust Brain Extraction Tool for CT Head Images☆44Updated 4 years ago
- Contrast-agnostic segmentation of MRI scans☆372Updated 3 months ago
- Code for "Generalizable deep learning model for early Alzheimer’s disease detection from structural MRIs"☆140Updated 2 years ago
- Software platform for clinical neuroimaging studies☆225Updated this week
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆94Updated last month
- Code for implementation of Unlearning Scanner Bias for MRI Harmonisation☆26Updated 3 years ago
- Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …☆32Updated 3 years ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆62Updated 3 months ago
- Easy multiple sclerosis white matter lesion segmentation using convolutional deep neural networks.☆46Updated last year
- A Python API for deploying deep neural networks for Neuroimaging research. Powered by IMG at Stevens Neuroimaging and Informatics Institu…☆37Updated 3 years ago
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆77Updated 2 years ago