Alternatives and similar repositories for feral

Users that are interested in feral are comparing it to the libraries listed below

• nel-lab / FIOLA
  ☆34Updated 7 months ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆93Updated 4 years ago
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆109Updated 4 months ago
• neuroethology / bento
  ☆12Updated last year
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆27Updated this week
• calebweinreb / SNUB
  ☆28Updated 2 months ago
• AllenInstitute / cocoframer
  COmmon COordinate FRAMEwork in R
  ☆38Updated 5 years ago
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated last year
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆170Updated 2 weeks ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆35Updated this week
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆223Updated this week
• Whitlock-Group / HERBS
  ☆52Updated last year
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆30Updated 2 years ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆22Updated 2 years ago
• sanderslab / magellanmapper
  MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
  ☆22Updated this week
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆46Updated last year
• yu-lab-vt / AQuA2
  Activity Quantification and Analysis for molecular spatiotemporal signals
  ☆33Updated 3 weeks ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• EthoML / VAME
  Variational Animal Motion Embedding - A tool for time series embedding and clustering
  ☆39Updated 3 months ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆141Updated this week
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆112Updated 3 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• brainglobe / cellfinder-core
  Standalone cellfinder cell detection algorithm
  ☆20Updated 2 years ago
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆107Updated this week
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated 2 years ago
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆61Updated 2 years ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆54Updated last year
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated 2 years ago