Alternatives and similar repositories for list

Users that are interested in list are comparing it to the libraries listed below

• cdcepi / FluSight-forecasts
  FluSight Forecast Submissions
  ☆19Updated last year
• FluSightNetwork / cdc-flusight-ensemble
  Guidelines and forecasts for a collaborative U.S. influenza forecasting project.
  ☆39Updated 5 years ago
• PublicHealthDynamicsLab / FRED
  The Public FRED Repository
  ☆78Updated last year
• cmrivers / epipy
  Python tools for epidemiology
  ☆140Updated 2 years ago
• myhelix / helix-covid19db
  Helix® COVID-19 Surveillance
  ☆16Updated 5 months ago
• reichlab / flusight
  Influenza forecasts visualizer
  ☆41Updated 2 years ago
• cmmid / covid-age
  Analysis code and data for COVID-19 age-specific clinical fraction
  ☆23Updated 5 years ago
• greenelab / covid19-review
  A collaborative review of the emerging COVID-19 literature. Join the chat here:
  ☆118Updated last year
• mrc-ide / mcstate
  Monte-Carlo State Space Models
  ☆19Updated last year
• cdcepi / Flusight-forecast-data
  ☆40Updated last year
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆18Updated 4 years ago
• nuest / ten-simple-rules-dockerfiles
  Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science
  ☆67Updated 4 years ago
• seandavi / sars2pack
  An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources
  ☆59Updated 3 years ago
• cmu-delphi / delphi-epidata
  An open API for epidemiological data.
  ☆104Updated last week
• reichlab / covidHubUtils
  Utility functions for the COVID-19 forecast hub
  ☆18Updated last year
• CADDE-CENTRE / Novel-SARS-CoV-2-P1-Lineage-in-Brazil
  ☆19Updated 4 years ago
• seabbs / idmodelr
  Infectious disease model library and utilities
  ☆14Updated 3 years ago
• epiforecasts / covidregionaldata
  An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…
  ☆37Updated 2 years ago
• binder-examples / r-conda
  R and RStudio via conda packages in repo2docker
  ☆31Updated last year
• jtleek / ads2020
  Advanced Data Science 2020 Edition
  ☆75Updated last year
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• carpentries / sandpaper
  User Interface for The Carpentries Workbench
  ☆47Updated last week
• covidestim / covidestim
  Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States
  ☆27Updated last month
• epiforecasts / covid-rt-estimates
  National and subnational estimates of the time-varying reproduction number for Covid-19
  ☆34Updated 3 years ago
• ahgroup / DSAIDE
  R Package - Dynamical Systems Approach to Infectious Disease Epidemiology
  ☆26Updated last year
• greenelab / manubot-gpt-manuscript
  Manuscript describing software for the automated revision of manubot manuscripts.
  ☆17Updated last year
• cdcepi / FluSight-forecast-hub
  ☆44Updated last week
• reconverse / incidence2
  Compute and visualise incidence (reworking of the original incidence package)
  ☆17Updated last month
• rs-delve / covid19_datasets
  Interfacing several COVID-19 related datasets
  ☆45Updated 3 years ago
• cmu-delphi / epiforecast-R
  R package to implement and visualize several epidemiological forecasting methods.
  ☆20Updated last year