A bioinformatic pipeline for ultra-fast analysis of cfDNA using Oxford Nanopore Technologies sequencing.
☆12Apr 25, 2024Updated 2 years ago
Alternatives and similar repositories for ITSFASTR
Users that are interested in ITSFASTR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fragment End Integrated Analysis tool☆10Apr 23, 2024Updated 2 years ago
- ☆11Jan 9, 2025Updated last year
- Workflow for preprocessing cfDNA samples.☆14Nov 11, 2024Updated last year
- Grow your own Christmas tree within R using tree architectural models☆13Dec 17, 2019Updated 6 years ago
- ☆23Aug 13, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- LIONHEART detects cancer from whole genome sequenced plasma cell-free DNA.☆15Aug 2, 2026Updated 2 months ago
- ☆12Apr 8, 2021Updated 5 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Aug 30, 2024Updated 2 years ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Updated this week
- Serverless implementation of Beacon V2 protocol, to enable cheaper and faster exchange of genomic and phenotypic information☆15Jun 1, 2026Updated 4 months ago
- fRagmentomics is a standardized and user-friendly R package that integrates fragmentomic feature extraction with fragment-level mutation …☆13Oct 20, 2026Updated last week
- Docker image build for nextstrain/base☆12Updated this week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆98Sep 9, 2026Updated last month
- Collection of Singularity build files and scripts to create them for popular Linux Distributions☆10Jun 23, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Oct 15, 2026Updated 2 weeks ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆13Apr 14, 2022Updated 4 years ago
- Map genetic variants and protein positions to protein interfaces in 3D☆12Sep 22, 2023Updated 3 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆32Jul 27, 2023Updated 3 years ago
- A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration wi…☆11Sep 18, 2026Updated last month
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆41Updated this week
- Tumour-only somatic mutation calling using long reads☆29Oct 28, 2024Updated 2 years ago
- Nextstrain build for novel coronavirus SARS-CoV-2☆11Jan 11, 2021Updated 5 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- ☆16Mar 4, 2025Updated last year
- Visual exploration of large genome interaction matrices with interactive small multiples.☆13Dec 1, 2021Updated 4 years ago
- ☆28Updated this week
- ☆19Dec 23, 2024Updated last year
- VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact…☆16Jul 21, 2026Updated 3 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Oct 23, 2026Updated last week
- ☆17Oct 16, 2025Updated last year
- Bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for pre…☆16Oct 7, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Jul 23, 2025Updated last year
- This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…☆46May 12, 2025Updated last year
- ☆80Jun 4, 2021Updated 5 years ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆45Jun 29, 2026Updated 4 months ago
- ☆17Jul 28, 2025Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago
- Workshop for CNV analysis with Bioconductor☆17Jan 6, 2025Updated last year