Alternatives and similar repositories for FERMO:

Users that are interested in FERMO are comparing it to the libraries listed below

• madeleineernst / pyMolNetEnhancer
  ☆20Updated last year
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆25Updated last month
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆44Updated 5 months ago
• ccdmb / BioDendro
  A package to cluster and visualise MS/MS spectral data
  ☆11Updated 3 years ago
• mwang87 / MassQueryLanguage
  The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …
  ☆39Updated 2 months ago
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆32Updated last year
• biosustain / pyOpenMS_UmetaFlow
  Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)
  ☆18Updated 3 months ago
• computational-metabolomics / dimspy
  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
  ☆19Updated last year
• tiagolbiotech / NPOmix_python
  ☆13Updated last year
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆35Updated this week
• eMetaboHUB / MS-CleanR
  ☆25Updated last year
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆25Updated 11 months ago
• mandelbrot-project / memo
  Ms2 basEd saMple vectOrization (memo) package
  ☆17Updated last year
• czbiohub-sf / Rapid-QC-MS
  Realtime quality control for mass spectrometry data acquisition
  ☆15Updated 3 months ago
• NPLinker / nplinker
  A python framework for microbial natural products data mining by integrating genomics and metabolomics data
  ☆18Updated 2 weeks ago
• computational-metabolomics / beamspy
  BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)
  ☆17Updated last year
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆13Updated last year
• Philipbear / BUDDY_Metabolomics
  Molecular formula discovery via bottom-up MS/MS interrogation
  ☆13Updated 5 months ago
• robinschmid / microbe_masst
  Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
  ☆18Updated 3 weeks ago
• bittremieux-lab / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆27Updated last week
• Philipbear / msbuddy
  a python package for molecular formula analysis in MS-based small molecule studies
  ☆24Updated this week
• ssi-dk / CD-MRG-metabolomics_summerschool_2023
  This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…
  ☆12Updated last year
• YasinEl / mzRAPP
  Tool for reliability assessment of omics peprocessing
  ☆10Updated last year
• ablab / npdtools
  Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…
  ☆26Updated 2 years ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated 2 years ago
• biorack / simile
  ☆16Updated 2 years ago
• Gscorreia89 / chemometrics-tutorials
  ☆12Updated 2 years ago
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆11Updated last week
• DorresteinLaboratory / Bioactive_Molecular_Networks
  Bioactive Molecular Networks Project
  ☆14Updated 4 years ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆23Updated last year