Alternatives and similar repositories for HDDA

Users that are interested in HDDA are comparing it to the libraries listed below

• mistrm82 / msu_ngs2015
  DE analysis module for Week3
  ☆66Updated 9 years ago
• BCCHR-trainee-omics-group / StudyGroup
  This is where TOG houses all of its workshop scripts, as well as details on its upcoming workshops and seminars.
  ☆44Updated last year
• srp33 / TCGA_RNASeq_Clinical
  ☆62Updated 5 years ago
• obigriffith / biostar-tutorials
  Code for biostar tutorials - mostly R and Perl
  ☆50Updated last year
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆138Updated 5 years ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆179Updated 2 weeks ago
• MaayanLab / Zika-RNAseq-Pipeline
  An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
  ☆103Updated 3 years ago
• ENCODE-DCC / long-rna-seq-pipeline
  STAR based ENCODE Long RNA-Seq processing pipeline
  ☆96Updated 4 years ago
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆118Updated 5 years ago
• hbctraining / Accessing_public_genomic_data
  Tutorials on accessing public reference and genomic data
  ☆30Updated 11 months ago
• cBioPortal / datahub
  A centralized location for storing curated data from cBioPortal
  ☆198Updated this week
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆173Updated 4 years ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆86Updated 3 weeks ago
• chrisamiller / fishplot
  Create timecourse "fish plots" that show changes in the clonal architecture of tumors
  ☆171Updated 2 weeks ago
• bcgsc / mirna
  microRNA profiling pipeline
  ☆81Updated 4 years ago
• sjcockell / lockdown-learning
  Scripts written for my Bioinformatics-along on YouTube: https://www.youtube.com/playlist?list=PLzfP3sCXUnxEu5S9oXni1zmc1sjYmT1L9
  ☆77Updated 4 years ago
• ENCODE-DCC / chip-seq-pipeline
  ENCODE Uniform processing pipeline for ChIP-seq
  ☆124Updated 5 years ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆394Updated 4 months ago
• kundajelab / atac_dnase_pipelines
  ATAC-seq and DNase-seq processing pipeline
  ☆165Updated 3 years ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆236Updated last month
• oncokb / oncokb-annotator
  Annotates variants in MAF with OncoKB annotation.
  ☆141Updated last month
• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆128Updated last year
• tallulandrews / scRNASeqPipeline
  ☆118Updated 7 years ago
• jtleek / genstats
  Statistics course for JHU Genomic Data Science Sequence
  ☆164Updated 10 years ago
• JoniColeman / gwas_scripts
  Codebook from my GWAS cookbook
  ☆193Updated 3 years ago
• mgonzalezporta / TeachingMaterial
  RNA-seq data analysis practical
  ☆62Updated 11 years ago
• raerose01 / deconstructSigs
  deconstructSigs
  ☆144Updated 2 years ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆133Updated last year
• bioinformatics-core-shared-training / microarray-analysis
  Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)
  ☆54Updated 8 years ago
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆116Updated 3 years ago