maltesie / bridge2Links
GUI for interactive graph-based analyses of hydrogen bond networks in crystal structures and MD trajectories.
☆9Updated 2 years ago
Alternatives and similar repositories for bridge2
Users that are interested in bridge2 are comparing it to the libraries listed below
Sorting:
- Deep generative modeling of protein structural ensembles☆21Updated 4 months ago
- Interface-aware molecular generative framework for protein-protein interaction modulators☆15Updated 7 months ago
- Python rich client for visual protein Sequence to Structure Analysis☆18Updated this week
- ☆12Updated 2 years ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆11Updated last year
- Protein Sequence Evolutionary Information Language Model☆13Updated last year
- Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…☆17Updated last year
- Modelling protein conformational landscape with Alphafold☆51Updated 2 weeks ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 9 months ago
- Neural Iterative Selection-Expansion using LASErMPNN and Boltz-2x☆18Updated last week
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆10Updated 7 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated 2 months ago
- ☆15Updated 7 months ago
- Some scripts that I keep using over and over.☆19Updated last month
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Updated 10 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆15Updated 4 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 5 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆34Updated last month
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 2 months ago
- Code for ApoDock☆20Updated 4 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated 2 years ago
- De novo design of small molecule binding sites into proteins☆12Updated 4 years ago
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆35Updated 2 weeks ago
- Structure prediction and design of proteins with noncanonical amino acids☆83Updated last week
- ☆36Updated this week
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆18Updated 5 months ago
- DyNoPy☆11Updated 11 months ago
- ☆13Updated last year
- ☆33Updated last year
- ☆28Updated 7 months ago