Alternatives and similar repositories for pubmex

Users that are interested in pubmex are comparing it to the libraries listed below

• paperfetcher / paperfetcher
  Pip-installable Python package to automate handsearching and citation searching for systematic reviews.
  ☆13Updated last year
• datovar4 / Ai_Literature_Review_Suite
  ☆20Updated 5 months ago
• bio2bel / drugbank
  A Bio2BEL package for DrugBank (https://www.drugbank.ca)
  ☆10Updated 4 years ago
• pykong / PyperGrabber
  Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.
  ☆35Updated 6 years ago
• JetBrains-Research / pubtrends-review
  Automatic generation of reviews of scientific papers
  ☆31Updated 5 months ago
• esperr / pubmed-by-year
  Visualize the proportion of results for a given PubMed search over time and compare searches to one another!
  ☆14Updated 2 years ago
• dermatologist / ckblib
  Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
  ☆16Updated last year
• deepchem / deepdock
  An experimental package for deep learning for molecular docking
  ☆20Updated 5 years ago
• ddomingof / PubMed2PDF
  A Python package to download full article PDFs from OA publications
  ☆49Updated 8 months ago
• Imamachi-n / BioRxivCurator
  Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.
  ☆11Updated 5 years ago
• labsyspharm / DRIADrc
  Resources for Drug Repurposing In Alzheimer's Disease (DRIAD) work
  ☆11Updated 4 years ago
• CellProfiling / HPA-competition
  Human Protein Atlas image classification competition
  ☆13Updated 2 years ago
• Zar-rok / Zotero-Add-Collection-Tag
  Zotero plugin/addon to automatically include the name of the currently selected collection as a tag to a new item.
  ☆18Updated last year
• developmentAC / beagleTM
  A text mining tool for developing visual and interactive relationship networks from PubMed article information.
  ☆16Updated last year
• atsuyaw / NatureColorPalette
  Nature color palette optimized for color-blind individuals
  ☆14Updated 2 years ago
• jvfe / pytrials
  Python package that wraps around the ClinicalTrials.gov API
  ☆56Updated last year
• ShirleyWISiu / LigTMap
  LigTMap currently supports prediction for 17 protein target classes that include 6000+ protein targets.
  ☆16Updated 4 years ago
• DarkMatterAI / mrl
  Molecular Reinforcement Learning
  ☆14Updated 2 years ago
• tal-baum / drugbank_xml2csv_python
  Python script for processing DrugBank XML to MySQL-ready CSV files
  ☆19Updated 8 years ago
• batmanlab / drugEmbedding
  Hierarchical Embedding for Drugs
  ☆16Updated last year
• wudangt / awesome-molecular-modeling-and-drug-discovery
  A curated list of awesome Molecular Modeling And Drug Discovery 🔥
  ☆11Updated 3 years ago
• davidbajusz / fpkit
  FingerPrint Kit - Python-based cheminformatics package for fingerprint-related tasks
  ☆12Updated 3 months ago
• kalemaria / pycurv
  Reliable estimation of membrane curvature for cryo-electron tomography
  ☆21Updated 2 months ago
• vinayakumarr / ICMR
  ICMR Sponsored Seminar On Deep Learning Techniques and Tools for Medical Applications
  ☆14Updated 5 years ago
• codeforamerica / clinical_trials_python
  Python API for the ClinicalTrials.gov API
  ☆22Updated 14 years ago
• kgayvert / PrOCTOR
  A Data-Driven Approach to Predicting Successes and Failures of Clinical Trials
  ☆19Updated 5 years ago
• alan-turing-institute / grace
  Graph Representation Analysis for Connected Embeddings
  ☆34Updated 11 months ago
• ProteinQure / cbh21-protein-solubility-challenge
  Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…
  ☆22Updated 4 years ago
• biocypher / project-template
  Template for creating a BioCypher-driven knowledge graph
  ☆12Updated last month
• NCBI-Hackathons / drugdisco
  A high throughput automated drug discovery pipeline.
  ☆29Updated 7 years ago