mmagnus / pubmexLinks
get full paper names for downloaded publications automatically
☆21Updated 2 years ago
Alternatives and similar repositories for pubmex
Users that are interested in pubmex are comparing it to the libraries listed below
Sorting:
- ☆20Updated 7 months ago
- Pip-installable Python package to automate handsearching and citation searching for systematic reviews.☆14Updated last year
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Updated 4 years ago
- This Network-graph based literature review tool uses the open-source version of Neo4j with Jupyter Notebooks written in Python to import …☆12Updated 2 years ago
- A Python package to download full article PDFs from OA publications☆51Updated 9 months ago
- An experimental package for deep learning for molecular docking☆20Updated 5 years ago
- Meta-analysis toolbox for basic research applications. Developed in MATLAB R2016b.☆13Updated 6 years ago
- Zotero plugin/addon to automatically include the name of the currently selected collection as a tag to a new item.☆18Updated last year
- litreviewer is a Python package (collection of few Python modules) that helps researchers perform crawling, scraping, collecting (corpus)…☆46Updated last year
- Downloads pdfs via a DOI number, article title or a bibtex file, using the database of libgen(sci-hub) , arxiv☆213Updated 5 years ago
- Parsers for chromatography data in R (HPLC-DAD/UV, GC-FID, MS)☆40Updated last month
- A web scraping tool to systematically extract the text of scientific papers and corresponding metadata from university accessible journal…☆216Updated 3 years ago
- Python package that wraps around the ClinicalTrials.gov API☆56Updated last year
- Visualize the proportion of results for a given PubMed search over time and compare searches to one another!☆15Updated 2 years ago
- A toolkit for automatically extracting semantic information from PDF files of scientific articles☆73Updated last year
- Nature color palette optimized for color-blind individuals☆14Updated 2 years ago
- Hierarchical Embedding for Drugs☆16Updated last year
- Resources for Drug Repurposing In Alzheimer's Disease (DRIAD) work☆11Updated 4 years ago
- PubMed scraper for async search on a list of keywords and concurrent extraction of all found URLs, returning a DataFrame/CSV containing a…☆43Updated 4 years ago
- Plugin for zotero to retrieve reference data from Semantic Scholar API and add them to your library☆40Updated 2 years ago
- A high throughput automated drug discovery pipeline.☆29Updated 7 years ago
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆16Updated last year
- Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…☆22Updated 4 years ago
- Application for mutagenic primer design. Facilitates development of biocatalysts (Green Chemistry) and new therapeutic proteins.☆17Updated this week
- Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.☆35Updated 7 years ago
- This web app aims to help scientists with their literature review using metadata from OpenAlex (OA), Semantic Scholar (S2) and Crossref (…☆131Updated 5 months ago
- Molecular Reinforcement Learning☆14Updated 2 years ago
- PDF Downloader with SCI-HUB☆51Updated 2 years ago
- The Database Infrastructure for Mass Spectrometry (DIMSpec) project☆26Updated 4 months ago
- Human Protein Atlas image classification competition☆13Updated 2 years ago