lucidrains / invariant-point-attentionView external linksLinks
Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module
☆171Nov 25, 2022Updated 3 years ago
Alternatives and similar repositories for invariant-point-attention
Users that are interested in invariant-point-attention are comparing it to the libraries listed below
Sorting:
- A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms☆144Apr 20, 2022Updated 3 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 3 years ago
- Implementation of E(n)-Transformer, which incorporates attention mechanisms into Welling's E(n)-Equivariant Graph Neural Network☆226Jun 2, 2024Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆414Jul 3, 2023Updated 2 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Mar 7, 2024Updated last year
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆58Dec 2, 2020Updated 5 years ago
- ☆16Sep 24, 2025Updated 4 months ago
- code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503☆567Jul 10, 2023Updated 2 years ago
- A 3D-equivariant neural network for protein structure accuracy estimation☆20Feb 24, 2023Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Jun 23, 2024Updated last year
- An all-atom protein structure dataset for machine learning.☆359Mar 16, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆230Aug 27, 2025Updated 5 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆82Aug 11, 2024Updated last year
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated last year
- ☆25May 9, 2022Updated 3 years ago
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,267Dec 16, 2025Updated 2 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- ☆116Dec 7, 2022Updated 3 years ago
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago
- Generative Models for Graph-Based Protein Design☆284Dec 24, 2020Updated 5 years ago
- Attempt at reproduction of AlphaFold2☆98Oct 23, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆70Jan 31, 2024Updated 2 years ago
- Pytorch differentiable molecular dynamics☆184Sep 5, 2022Updated 3 years ago
- Implementation of Token Shift GPT - An autoregressive model that solely relies on shifting the sequence space for mixing☆49Jan 27, 2022Updated 4 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆728Jun 19, 2024Updated last year
- ☆208Apr 21, 2025Updated 9 months ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆274Dec 10, 2024Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆185Apr 21, 2024Updated last year
- Graph neural network message passing reframed as a Transformer with local attention☆70Dec 24, 2022Updated 3 years ago
- Compressing protein structures effectively with torsion angles☆186Feb 10, 2026Updated last week
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆49Jan 24, 2022Updated 4 years ago
- protein structure generation with sparse all-atom denoising models☆59Dec 11, 2025Updated 2 months ago
- Experiments in protein folding through language modeling☆10Dec 10, 2021Updated 4 years ago
- pytorch implementation of trDesign☆44Mar 19, 2021Updated 4 years ago
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆19Dec 23, 2025Updated last month
- Official repository for the paper: "Trees with Attention for Set Prediction Tasks" (ICML21)☆10Jan 19, 2022Updated 4 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆174Feb 4, 2026Updated 2 weeks ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year