Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module
☆171Nov 25, 2022Updated 3 years ago
Alternatives and similar repositories for invariant-point-attention
Users that are interested in invariant-point-attention are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of SE3-Transformers for Equivariant Self-Attention, in Pytorch. This specific repository is geared towards integration wit…☆331Aug 28, 2025Updated 10 months ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 3 years ago
- Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein…☆290Dec 17, 2024Updated last year
- Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, …☆39Aug 3, 2021Updated 4 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆77Jun 8, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms☆143Apr 20, 2022Updated 4 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- Implementation of E(n)-Transformer, which incorporates attention mechanisms into Welling's E(n)-Equivariant Graph Neural Network☆226Jun 2, 2024Updated 2 years ago
- Implementation of E(n)-Equivariant Graph Neural Networks, in Pytorch☆530Dec 6, 2024Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆36May 28, 2024Updated 2 years ago
- A 3D-equivariant neural network for protein structure accuracy estimation☆22Feb 24, 2023Updated 3 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆88Apr 21, 2026Updated 2 months ago
- code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503☆580Apr 3, 2026Updated 3 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆83Aug 11, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Implementation of Lie Transformer, Equivariant Self-Attention, in Pytorch☆98Feb 19, 2021Updated 5 years ago
- An all-atom protein structure dataset for machine learning.☆364Mar 16, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 10 months ago
- Implementation of Tranception, an attention network, paired with retrieval, that is SOTA for protein fitness prediction☆32Jun 19, 2022Updated 4 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated last year
- Neural network model for prediction of amino-acid sequence from a protein backbone structure☆25Mar 5, 2025Updated last year
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆58Dec 2, 2020Updated 5 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Aug 27, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,392Dec 16, 2025Updated 6 months ago
- To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released☆1,632Oct 29, 2022Updated 3 years ago
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆24Apr 10, 2026Updated 3 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆66Jun 20, 2022Updated 4 years ago
- Implementation of a Transformer using ReLA (Rectified Linear Attention) from https://arxiv.org/abs/2104.07012☆49Apr 6, 2022Updated 4 years ago
- Implementation of some personal helper functions for Einops, my most favorite tensor manipulation library ❤️☆57Jan 5, 2023Updated 3 years ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆292Dec 10, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- DLPacker☆32Aug 26, 2024Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆188Apr 21, 2024Updated 2 years ago
- Implementation of Graph Transformer in Pytorch, for potential use in replicating Alphafold2☆238Jun 22, 2023Updated 3 years ago
- ☆27May 9, 2022Updated 4 years ago
- Implementation of Token Shift GPT - An autoregressive model that solely relies on shifting the sequence space for mixing☆49Jan 27, 2022Updated 4 years ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- Generative Models for Graph-Based Protein Design☆291Dec 24, 2020Updated 5 years ago