h3abionet / TADA
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
☆20Updated this week
Alternatives and similar repositories for TADA:
Users that are interested in TADA are comparing it to the libraries listed below
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆19Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 weeks ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 9 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆24Updated last week
- ☆26Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆18Updated 2 months ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- ☆26Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated 2 weeks ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆21Updated last year
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆59Updated 7 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 9 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Surveillance of pathogens using population genomics and sequencing☆22Updated last week
- TAXnomic Profile Aggregation and STAndardisation☆39Updated 5 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year
- Correct and scaffold assemblies using long reads☆51Updated last year