h3abionet / TADA
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
☆19Updated this week
Alternatives and similar repositories for TADA:
Users that are interested in TADA are comparing it to the libraries listed below
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆18Updated last week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆24Updated last week
- ☆27Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Gene-flank analysis tool☆26Updated last month
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Resolving Species Level Classification Using Emu☆12Updated 7 months ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 6 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆30Updated 6 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆32Updated last month
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 2 months ago
- Find Unique genomic Regions☆29Updated last week
- multiPhATE with comparative genomics☆18Updated 3 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated last year
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 6 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆48Updated 2 years ago
- Bacterial GWAS analysis☆34Updated last month
- Intra-species bacterial contamination detection☆24Updated last month
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- strain-level analysis tools☆33Updated 2 months ago