h3abionet / TADA
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
☆20Updated 2 weeks ago
Alternatives and similar repositories for TADA:
Users that are interested in TADA are comparing it to the libraries listed below
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆19Updated 5 years ago
- Working with the outputs of sourmash in R☆26Updated last year
- Influenza genome analysis Nextflow workflow☆19Updated 3 weeks ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆35Updated last week
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Read contamination removal☆24Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆54Updated 5 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆32Updated 3 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆40Updated 10 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 3 months ago
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 3 months ago
- Find Unique genomic Regions☆29Updated last month
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated last year
- Resolving Species Level Classification Using Emu☆12Updated 8 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆28Updated 6 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 7 months ago
- Intra-species bacterial contamination detection☆25Updated last week