h3abionet / TADALinks
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
☆22Updated last week
Alternatives and similar repositories for TADA
Users that are interested in TADA are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Read contamination removal☆25Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- ☆29Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Remove human reads from a sequencing run☆40Updated 3 months ago
- Gene-flank analysis tool☆33Updated 10 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- strain-level analysis tools☆39Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Pangenome analysis of eukaryotes.☆20Updated 5 years ago
- A Nextflow full-length 16S profiling pipeline for ONT reads☆25Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆42Updated last month
- Automated strain separation of low-complexity metagenomes☆52Updated 3 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 8 months ago
- Intra-species bacterial contamination detection☆25Updated 8 months ago