h3abionet / TADALinks
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
☆22Updated last month
Alternatives and similar repositories for TADA
Users that are interested in TADA are comparing it to the libraries listed below
Sorting:
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆60Updated last week
- ☆26Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last month
- Remove human reads from a sequencing run☆40Updated last month
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- ☆29Updated 3 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆21Updated last month
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- CRyPTIC data processing pipelines☆34Updated last year
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆18Updated last year
- Read contamination removal☆25Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆36Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆54Updated 2 months ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- A Nextflow pipeline for running synteny analysis.☆15Updated 3 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆22Updated last week
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 9 months ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Ancient microbiome snakemake workflow☆25Updated 5 months ago