yeung-lab / Micro-Bench
A Vision-Language Benchmark for Microscopy Understanding
☆21Updated last month
Alternatives and similar repositories for Micro-Bench:
Users that are interested in Micro-Bench are comparing it to the libraries listed below
- O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data☆25Updated 7 months ago
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆107Updated 4 months ago
- Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023☆98Updated last year
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆46Updated 2 months ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆90Updated 3 months ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆67Updated 4 months ago
- HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)☆206Updated last month
- MADELEINE: multi-stain slide representation learning (ECCV'24)☆39Updated 3 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆94Updated 4 months ago
- Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., Med…☆149Updated 11 months ago
- ☆83Updated 8 months ago
- ☆47Updated 2 weeks ago
- [NeurIPS 2023 Oral] Quilt-1M: One Million Image-Text Pairs for Histopathology.☆140Updated last year
- Codebase for "A Foundation Model for Cell Segmentation"☆61Updated 5 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆87Updated 6 months ago
- List of pathology feature extractors and foundation models☆78Updated this week
- ☆131Updated this week
- ☆17Updated last year
- [MICCAI 2023 Oral] The official code of "Pathology-and-genomics Multimodal Transformer for Survival Outcome Prediction" (top 9%)☆83Updated 3 months ago
- A vision language model for gigapixel whole slide images in histopathology☆30Updated 3 months ago
- Multimodal Whole Slide Foundation Model for Pathology☆145Updated last month
- Blood Cell Foundation Model based on DINOv2☆35Updated 7 months ago
- This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…☆34Updated 5 months ago
- TCGA Pathology Reports in Machine Readable Text☆35Updated 7 months ago
- BIOMEDICA: An Open Biomedical Image-Caption Archive, Dataset, and Vision-Language Models Derived from Scientific Literature☆28Updated this week
- A vision-language foundation model for computational pathology - Nature Medicine☆299Updated this week
- Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024☆122Updated 2 months ago
- Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PL…☆294Updated last year
- ☆87Updated 2 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆64Updated 6 months ago