farhat-lab / wdnnView external linksLinks
Wide and Deep Neural Net for predicting TB resistance from genotypic data
☆14Dec 9, 2019Updated 6 years ago
Alternatives and similar repositories for wdnn
Users that are interested in wdnn are comparing it to the libraries listed below
Sorting:
- ☆14Jun 30, 2021Updated 4 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- Antibiotic resistance prediction in minutes☆114Nov 24, 2024Updated last year
- Mycobacterium tuberculosis next generation sequence analysis☆24Oct 11, 2019Updated 6 years ago
- Burrows-Wheeler Aligner for x86,x86_64, arm and aarch64 architectures (PC, Raspberry PI, ODROID, M1)☆10Apr 13, 2022Updated 3 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Apr 2, 2021Updated 4 years ago
- Standard database for the TBProfiler tool☆31Aug 19, 2025Updated 5 months ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆47Sep 8, 2025Updated 5 months ago
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆10Jul 5, 2024Updated last year
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆15Mar 3, 2025Updated 11 months ago
- Visualization of the COVID-19 trend with Matplotlib and GeoPandas☆10Feb 28, 2021Updated 4 years ago
- Facemash is a website created by Mark Zuckerberg in 2003, where people had to choose between two photos. This is clone of facemash in the…☆10Feb 13, 2017Updated 9 years ago
- ☆10Jan 20, 2022Updated 4 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆91Dec 3, 2025Updated 2 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆13Jan 26, 2026Updated 2 weeks ago
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jan 28, 2026Updated 2 weeks ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 13 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- This repository contains code for the AOP-Wiki XML-to-RDF conversion and guidance to deploy a Virtuoso SPARQL endpoint Docker image that …☆12Updated this week
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆107Feb 4, 2026Updated last week
- Phylogenetic tools for Eco-phylogenetics☆14Oct 10, 2024Updated last year
- Pipeline to create phage genome synteny graphics from genbank files☆14Oct 28, 2024Updated last year
- pySCM: The Set Covering Machine in Python☆14Apr 18, 2025Updated 9 months ago
- ☆12Feb 4, 2023Updated 3 years ago
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆12Apr 25, 2022Updated 3 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Bringing Old Photo Back to Life (CVPR 2020 oral)☆10Aug 3, 2021Updated 4 years ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 6 months ago
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- ☆11Mar 10, 2024Updated last year
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- LogSierra is a tracking time where you can log in and activate yourself. This way, the system will point in time where you have started y…☆15Sep 18, 2021Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 3 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Jan 14, 2026Updated last month
- ☆52May 5, 2025Updated 9 months ago
- seqfu - Sequece Fastx Utilities☆126Jan 31, 2026Updated last week
- Repository of Nextflow+BioContainers workflows☆14Sep 28, 2021Updated 4 years ago