erdogant / kaplanmeier

Related projects: ⓘ

• glasgowcompbio / pyMultiOmics
  Python toolbox for multi-omics data mapping and analysis
  ☆19Updated last year
• MRCIEU / epigraphdb
  Examples on using EpiGraphDB
  ☆25Updated 3 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆47Updated 2 years ago
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆33Updated 3 years ago
• spiros / tofu
  Tofu is a Python tool for generating synthetic UK Biobank data.
  ☆53Updated last year
• IlyaLab / CombiningDependentPvaluesUsingEBM
  Python, R and Matlab implementation of Brown's Method to combine dependent P-values
  ☆24Updated 6 years ago
• Pex2892 / PETAL
  PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
  ☆35Updated last year
• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆37Updated 3 years ago
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆36Updated 2 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆48Updated last year
• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆27Updated 11 months ago
• GenoML / genoml2
  GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
  ☆26Updated last month
• sunericd / dynamicviz
  ☆58Updated last year
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆45Updated this week
• bioFAM / mofax
  Work with trained factor models in Python
  ☆25Updated 7 months ago
• NCI-GDC / gdc-docs
  Official repository for GDC User Guides in Markdown format
  ☆58Updated this week
• maxconway / SNFtool
  Similarity Network Fusion
  ☆29Updated 9 years ago
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆60Updated 3 years ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆41Updated last year
• ZigaSajovic / Consensus_Clustering
  An implementation of Consensus clustering in Python
  ☆58Updated 4 months ago
• mims-harvard / SHEPHERD
  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
  ☆41Updated 3 weeks ago
• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆100Updated 5 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆56Updated 3 years ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆14Updated last year
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆82Updated 2 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated 6 years ago
• saphir746 / BiobankRead-Bash
  Python scripts to extract and pre-process UKB data
  ☆30Updated 5 years ago
• bmda-unibas / DeepArchetypeAnalysis
  TensorFlow-Implementation of Deep Archetypal Analysis
  ☆11Updated 3 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆47Updated last year
• Hua0113 / DCAP
  DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis
  ☆20Updated 3 years ago
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆33Updated 3 months ago