mathworks / MATLAB-support-for-Zarr-filesLinks
This repository provides an interface in MATLAB to read and write Zarr files. Zarr is a file format for scientific data (like HDF5 and netCDF) which is optimized for cloud storage and parallel computing environments.
☆18Updated last month
Alternatives and similar repositories for MATLAB-support-for-Zarr-files
Users that are interested in MATLAB-support-for-Zarr-files are comparing it to the libraries listed below
Sorting:
- Browse your OMERO database from within napari.☆40Updated 3 weeks ago
- ☆18Updated this week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆15Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆59Updated last week
- ☆14Updated this week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 10 months ago
- GIve easy, high-level access to ome-zarr fileset☆22Updated 4 months ago
- native Python dataclasses for the OME data model☆65Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆20Updated 6 months ago
- Pydantic models for OME-NGFF☆24Updated 4 months ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Updated last year
- Segment images utilizing pre-trained neural networks as feature extractors☆47Updated 2 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆43Updated 3 weeks ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated 2 years ago
- python tools for BigDataViewer☆22Updated last year
- Streaming directly to Zarr on the file system or S3☆27Updated this week
- ☆20Updated 3 weeks ago
- Particle tracking by solving linear assignment problem.☆61Updated last week
- Create web-based OME-Zarr galleries☆22Updated 3 months ago
- ☆49Updated 2 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last month
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Updated 2 months ago
- Python module for registering and fusing multi-view microscopy data☆24Updated 11 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆38Updated this week
- ☆41Updated last week