samirelanduk / atomiumLinks
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
☆106Updated last year
Alternatives and similar repositories for atomium
Users that are interested in atomium are comparing it to the libraries listed below
Sorting:
- View proteins and trajectories in the terminal☆110Updated 5 years ago
- A simple Python library to generate model peptides☆87Updated 4 years ago
- A primer on statistical mechanics for biochemists☆47Updated 2 years ago
- Code and resources for the EPSRC BioSimSpace project.☆79Updated 9 months ago
- A Python library for structural cheminformatics☆102Updated 4 months ago
- ☆127Updated 9 years ago
- Calculation of interatomic interactions in molecular structures☆105Updated 11 months ago
- Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation☆126Updated 2 years ago
- The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…☆80Updated last year
- Modeling with limited data☆59Updated last month
- C-library for calculating Solvent Accessible Surface Areas☆153Updated last month
- The MinHashed Atom Pair fingerprint of radius 2☆115Updated 2 years ago
- ☆45Updated 3 months ago
- ☆69Updated 2 months ago
- Use UCSF Chimera Python API in a standard interpreter☆58Updated 6 years ago
- Software for biomolecular electrostatics and solvation calculations☆107Updated 11 months ago
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆45Updated last year
- FreeSASA Python Module☆56Updated 3 weeks ago
- Modeling molecular ensembles with scalable data structures and parallel computing☆36Updated last month
- mmCIF Core Access Library☆47Updated last week
- Pymol ScrIpt COllection (PSICO)☆60Updated 2 weeks ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆36Updated 3 months ago
- Calculation of interatomic interactions in molecular structures☆78Updated 3 years ago
- Python interface for the RCSB PDB search API.☆64Updated 5 months ago
- A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"☆38Updated last year
- Make a bunch of molecules☆96Updated 9 months ago
- Structure-informed machine learning for kinase modeling☆57Updated this week
- A high level cheminformatics package for the Scientific Python stack, built on RDKit.☆65Updated 5 years ago
- Protein and nucleic acid validation service☆86Updated last year
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆96Updated 2 years ago