Repository for the programming laboratory in bioinformatics.
☆64Dec 3, 2025Updated 4 months ago
Alternatives and similar repositories for bioinf575
Users that are interested in bioinf575 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆15Dec 8, 2024Updated last year
- This module includes functions that can be used to simulate mechanochemical phenomena.☆11Nov 16, 2021Updated 4 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆19May 26, 2025Updated 10 months ago
- 30 tutorials in Python to get you from a beginner to advanced☆10Jul 3, 2019Updated 6 years ago
- ATAC-seq lab for BIOINF545☆24Feb 17, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆42Mar 23, 2026Updated 2 weeks ago
- Spectral Gap Optimization of Parameters☆18Mar 28, 2020Updated 6 years ago
- FragIt main repository☆27Mar 6, 2026Updated last month
- Python script that receives a molecular dynamics or Monte Carlo trajectory and performs agglomerative clustering to classify similar stru…☆29Nov 1, 2025Updated 5 months ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Jan 16, 2015Updated 11 years ago
- ☆23Jun 8, 2020Updated 5 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆63Jan 12, 2026Updated 2 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆47Aug 25, 2024Updated last year
- Now with data scraping and implementation in PyTorch☆33Sep 15, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆68Jul 2, 2025Updated 9 months ago
- Convenience Python APIs for antibody numbering using ANARCI☆119May 19, 2025Updated 10 months ago
- View and stop running IPython notebook servers☆52Feb 12, 2025Updated last year
- ☆81Jan 9, 2026Updated 3 months ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆44May 3, 2020Updated 5 years ago
- my own studied materials and scripts☆61Jan 20, 2026Updated 2 months ago
- ☆161Dec 20, 2024Updated last year
- A collection of cheminformatics scripts that use rdkit☆70Jul 1, 2022Updated 3 years ago
- A list of software for pangenomics☆180Mar 24, 2026Updated 2 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆132Feb 13, 2025Updated last year
- ☆70Feb 13, 2026Updated last month
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆160Oct 22, 2025Updated 5 months ago
- ☆159Nov 3, 2022Updated 3 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆316Feb 10, 2026Updated last month
- An ultrafast memory-efficient short read aligner☆267May 11, 2022Updated 3 years ago
- RNAseq analysis notes from Ming Tang☆1,076Nov 15, 2021Updated 4 years ago
- Python suite for optimization of stationary points on ground- and excited states PES and determination of reaction paths.☆132Feb 11, 2026Updated last month
- ☆224May 6, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ENCODE ChIP-seq pipeline